View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8690_low_1 (Length: 510)
Name: NF8690_low_1
Description: NF8690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8690_low_1 |
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| [»] scaffold0007 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 6 - 496
Target Start/End: Original strand, 43013638 - 43014128
Alignment:
| Q |
6 |
actcacaaccaccaagtctcttcaagactatatatcataatctcttacattgactctgtaaatctagatcaccaattcaccattcttttgaattcttata |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43013638 |
actcacaaccaccaagtctcttcaagactatatatcataatctcttacattgactctgtaaatctagatcaccaattcaccattcttttgaattcttata |
43013737 |
T |
|
| Q |
106 |
gttttcatttcnnnnnnnaagnnnnnnnttataccactaattgttggttgtgagaattatgaatgaagtatgtacttttcctgcctattgttcttcatcc |
205 |
Q |
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||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43013738 |
gttttcatttctttttttaagaaaaaaattataccactaattgttggttgtgagtattatgaatgaagtatgtacttttcctgcctattgttcttcatcc |
43013837 |
T |
|
| Q |
206 |
nnnnnnnnnccttctctgtaaattttacctatagatctatgtattgcatgttgctagttgaagataataaccaagcaagttttacaagaaggttttaggc |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43013838 |
tttttttc-ccttctctgtaaattttacctatagatctatgtattgcatgttgctagttgaagataataaccaagcaagttttacaagaaggttttaggc |
43013936 |
T |
|
| Q |
306 |
gagtcaatgaggtgtggtttgtagatgttgttgatccagttgtcttcagaagcaacaccgatctggttatggtgttggtgatatttg-tttttcttcttc |
404 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
43013937 |
gagtcaatgaggtgtggtttgtagatgttgttgatctagttgccctcagaagcaacaccgatctggttatggtgttggtgatatttgtttttttttcttc |
43014036 |
T |
|
| Q |
405 |
ttcttgtagttgaggtggaaaatgaagatatactataataccagatctgattcttagtaaaaataaatgattatggtttttggtattatgat |
496 |
Q |
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| T |
43014037 |
ttcttgtagttgaggtggaaaatgaagatatactataataccagatctgattcttagtaaaaataaatgattatggtttttggtattatgat |
43014128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 161; Significance: 1e-85; HSPs: 2)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 320 - 496
Target Start/End: Original strand, 233384 - 233560
Alignment:
| Q |
320 |
tggtttgtagatgttgttgatccagttgtcttcagaagcaacaccgatctggttatggtgttggtgatatttgtttttcttcttcttcttgtagttgagg |
419 |
Q |
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|||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
233384 |
tggtttgtagatgttgttgatctagttgccttcagaagcaacaccgatctggttctggtgttggtgatatttgttttttttcttcttcttgtagttgagg |
233483 |
T |
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| Q |
420 |
tggaaaatgaagatatactataataccagatctgattcttagtaaaaataaatgattatggtttttggtattatgat |
496 |
Q |
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| T |
233484 |
tggaaaatgaagatatactataataccagatctgattcttagtaaaaataaatgattatggtttttggtattatgat |
233560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 6 - 116
Target Start/End: Original strand, 233239 - 233349
Alignment:
| Q |
6 |
actcacaaccaccaagtctcttcaagactatatatcataatctcttacattgactctgtaaatctagatcaccaattcaccattcttttgaattcttata |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
233239 |
actcacaaccaccaagtctcttcaagactatatatcataatctcttacattgactctgtaaatctagatctccaattcaccattcttttgaattcttata |
233338 |
T |
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| Q |
106 |
gttttcatttc |
116 |
Q |
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||||||||||| |
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| T |
233339 |
gttttcatttc |
233349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 239 - 335
Target Start/End: Original strand, 8950823 - 8950928
Alignment:
| Q |
239 |
gatctatgtattgcatgttgctagttgaagataata-----accaagcaagttttacaagaag---gttttaggcg-agtcaatgaggtgtggtttgtag |
329 |
Q |
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|||||||||||||||||||||||||||||||| ||| ||| | ||||||||| |||||| ||||| || | ||||||||||||||||||||||| |
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| T |
8950823 |
gatctatgtattgcatgttgctagttgaagatgataagtgtaccgaacaagttttagaagaagatagttttgggtgtagtcaatgaggtgtggtttgtag |
8950922 |
T |
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| Q |
330 |
atgttg |
335 |
Q |
| |
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||||| |
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| T |
8950923 |
gtgttg |
8950928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 79 - 116
Target Start/End: Original strand, 31315770 - 31315807
Alignment:
| Q |
79 |
aattcaccattcttttgaattcttatagttttcatttc |
116 |
Q |
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| T |
31315770 |
aattcaccattcttttgcattcttatagttttcatttc |
31315807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 79 - 116
Target Start/End: Complemental strand, 31318087 - 31318050
Alignment:
| Q |
79 |
aattcaccattcttttgaattcttatagttttcatttc |
116 |
Q |
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||||||||||||||||| |||||||||||||||||||| |
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| T |
31318087 |
aattcaccattcttttgcattcttatagttttcatttc |
31318050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 201
Target Start/End: Complemental strand, 7494009 - 7493964
Alignment:
| Q |
156 |
tgagaattatgaatgaagtatgtacttttcctgcctattgttcttc |
201 |
Q |
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| T |
7494009 |
tgagatttatggatgaagtatggccttttcctgcctattgttcttc |
7493964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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