View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8691_low_1 (Length: 597)
Name: NF8691_low_1
Description: NF8691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8691_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 16 - 588
Target Start/End: Complemental strand, 27125968 - 27125398
Alignment:
| Q |
16 |
agagatgctgtcgtgaagaaaacaattgctttgaaaggtgcacattacgattttgttaacggagcatttgaactgtgggatatagacttcaaaatttcac |
115 |
Q |
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| T |
27125968 |
agagatgctgtcgtgaagaaaacaattgctttgaaaggtgcacattacgattttgttaacggagcatttgaactgtgggatatagacttcaaaatttcac |
27125869 |
T |
|
| Q |
116 |
cctcagtgtccttttaagatttctaaggcgtcaaaaggaaagggttcataccctacaatgcatcttgtacatcatcgcggttcattttctctaaatcctc |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |
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| T |
27125868 |
cctcagtgtccttttaagatttctaaggcgtcaaaaggaaagggttcataccctacaatgcatcttgtacatcatcgtggttcattttctctaaatcccc |
27125769 |
T |
|
| Q |
216 |
ttaaaataagcatagacatagcaaaatgatggtctatgatctgcataacagtttttggtttgtaatgctttccgttaagtatagtggttttcattcggaa |
315 |
Q |
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| T |
27125768 |
ttaaaataagcatagacattgcaaaatgatggtctatgatctgcataacagtttttggtttgtaatgctttccgttaagtatagtggttttcattcggaa |
27125669 |
T |
|
| Q |
316 |
aactttgaaaataatctaccaatacagtttgagcaatgtattgggtatgagacgcttttatgcaaattgaatgctgtcaaatgtgaatgaagccttctca |
415 |
Q |
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| T |
27125668 |
aactttgaaaataatctcccaataaagtttgagcaatgtatttggtatgagttaattttattcaaattgaatgctgtcaaatgtgaatgaagtcttctca |
27125569 |
T |
|
| Q |
416 |
ttttgggatattaggatcaaataattaaactcctaccattgatttatttatttatagtttaaaccggtttatctttgtgcgtaagtacagagaccaattc |
515 |
Q |
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||||||||||||||||||||||||||||| ||||||||||| |||| ||||| | ||||||||||||| |||||||| || |||| ||||||| ||||| |
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| T |
27125568 |
ttttgggatattaggatcaaataattaaattcctaccattgcttta--tattttttgtttaaaccggttaatctttgtacgcaagtgcagagactaattc |
27125471 |
T |
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| Q |
516 |
ctcaaactgtgtaggaccgccatagataataaagctctcagaataataaacctcaaactgtgtaggaccacca |
588 |
Q |
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| T |
27125470 |
ctcaaactgtgtaggatcaccatagataataaagctttcagaataataaacatcaaactgtgtaggaccacca |
27125398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 14829163 - 14829243
Alignment:
| Q |
16 |
agagatgctgtcgtgaagaaaacaattgctttgaaaggtgcacattacgattttgttaacggagcatttgaactgtgggat |
96 |
Q |
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||||||| ||| |||||||||| ||||||||||||| ||||||||| |||||||||| || ||||||| ||||||||| |
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| T |
14829163 |
agagatggtgttgtgaagaaaagccttgctttgaaaggagcacattacaattttgttaatggcacatttgagctgtgggat |
14829243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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