View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8691_low_11 (Length: 228)
Name: NF8691_low_11
Description: NF8691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8691_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 22 - 214
Target Start/End: Original strand, 43439815 - 43440007
Alignment:
| Q |
22 |
aaggctgctcattttatttgagaccatgatttatagacattgtaagctggaaatagttggttcagtgttaattgtgcttaaacttgtaatgtataacttt |
121 |
Q |
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| T |
43439815 |
aaggctgctcgttttatttgagtccatgatttatagacgttgtaagccagcaataattggttcagtgttaattgtgcttaaacttgtaatgtacaacttt |
43439914 |
T |
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| Q |
122 |
tttaatatgctcgaagcttaaattgatattgagttatggaatggaacaaatataaagtatcacaaaaattcattttaaggctccttccttcat |
214 |
Q |
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| T |
43439915 |
ttgaacatgttcgaagcttaaattgattttgagttatggaatggaacaaatataaagtatcacaagaactcattttaaggctccttccttcat |
43440007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 22 - 214
Target Start/End: Original strand, 43742347 - 43742539
Alignment:
| Q |
22 |
aaggctgctcattttatttgagaccatgatttatagacattgtaagctggaaatagttggttcagtgttaattgtgcttaaacttgtaatgtataacttt |
121 |
Q |
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|||||||||| ||||||||||| ||||||||||||||| |||||||| | |||| ||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
43742347 |
aaggctgctcgttttatttgagtccatgatttatagacgttgtaagccagcaataattggttcagtgttaattgtgcttaaacttgtaatgtacaacttt |
43742446 |
T |
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| Q |
122 |
tttaatatgctcgaagcttaaattgatattgagttatggaatggaacaaatataaagtatcacaaaaattcattttaaggctccttccttcat |
214 |
Q |
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|| || ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
43742447 |
ttgaacatgttcgaagcttaaattgattttgagttatggaatggaacaaatataaagtatcacaagaactcattttaaggctccttccttcat |
43742539 |
T |
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