View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8691_low_4 (Length: 455)
Name: NF8691_low_4
Description: NF8691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8691_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 435
Target Start/End: Original strand, 49291799 - 49292217
Alignment:
| Q |
18 |
gtaattagtattttcaatggtaaaaaatagcataggacaataaaatttgtgaaaccataaaacttatctactgcctaatcattattctataacacaactc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49291799 |
gtaattagtattttcaatggtaaaaaatagcataggacaataaaatttgtgaaaccataaaacttatctactgcctaatcattattctataacacaactc |
49291898 |
T |
|
| Q |
118 |
tgaaattttgtctacatgcgaatattatgtatgttttttcccattttatattttaacatatccatgtatataaaatttccaaatgcatcatgaaatcctt |
217 |
Q |
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|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49291899 |
tgaaattttgtctacaggcgaagattatgtatgttttttcccattttatattttaacatatccatgtatataaaatttccaaatgcatcatgaaatcctt |
49291998 |
T |
|
| Q |
218 |
tcagtttaacgcttttaccggaatagttcttttag-tttcnnnnnnnnnnnnnaaattgatcttttatgtcaattaaagtgaacaagttagttcgttaat |
316 |
Q |
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|||||||||||||| || ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
49291999 |
tcagtttaacgcttgtatcggaatagttcttttagttttttattttatttttaaaattgatcttttatgtcaattaaagtgaacaagttagttggttaat |
49292098 |
T |
|
| Q |
317 |
annnnnnnnnnnnnnnnngcaacaagttgatccttttttcttctaactttgttgaaaagtgcttaagcaaccatttaacattgaggtggaaggtctaaaa |
416 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
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| T |
49292099 |
attttattttttatttttgcaacaagttgatccttttttcttctaactttgttgaaaagtgcttaagcaatcatttaacattgaggtagaaggtctaaaa |
49292198 |
T |
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| Q |
417 |
accgtttataacaccaaac |
435 |
Q |
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| T |
49292199 |
accgtttataacaccaaac |
49292217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 348 - 434
Target Start/End: Complemental strand, 42669210 - 42669124
Alignment:
| Q |
348 |
ccttttttcttctaactttgttgaaaagtgcttaagcaaccatttaacattgaggtggaaggtctaaaaaccgtttataacaccaaa |
434 |
Q |
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| T |
42669210 |
ccttttttcatccaactttgttcaaaagtgcttacatgaccatttaacgttgaggtggaaggtccaaaaagtgtttatgacaccaaa |
42669124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 348 - 435
Target Start/End: Complemental strand, 24755124 - 24755037
Alignment:
| Q |
348 |
ccttttttcttctaactttgttgaaaagtgcttaagcaaccatttaacattgaggtggaaggtctaaaaaccgtttataacaccaaac |
435 |
Q |
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| T |
24755124 |
ccttttttcatccaactttgttaaaaagtgcttacatggccatttaacattgaggtagaaggtccaaaaagtgtttatgacaccaaac |
24755037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 335 - 435
Target Start/End: Original strand, 40283815 - 40283915
Alignment:
| Q |
335 |
gcaacaagttgatc-cttttttcttctaactttgttgaaaagtgcttaagcaaccatttaacattgaggtggaaggtctaaaaaccgtttataacaccaa |
433 |
Q |
| |
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||||||| |||||| |||| ||| || ||||||||| ||||||||||| | || |||||||||||||||||||||| ||||| |||||| ||||||| |
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| T |
40283815 |
gcaacaaattgatctctttcttcatccaactttgttataaagtgcttaatga-ccttttaacattgaggtggaaggtccaaaaagtgtttatgacaccaa |
40283913 |
T |
|
| Q |
434 |
ac |
435 |
Q |
| |
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|| |
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|
| T |
40283914 |
ac |
40283915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 386 - 430
Target Start/End: Original strand, 15089122 - 15089166
Alignment:
| Q |
386 |
accatttaacattgaggtggaaggtctaaaaaccgtttataacac |
430 |
Q |
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|||||||||||||||||||||||||| ||||| ||||||| |||| |
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| T |
15089122 |
accatttaacattgaggtggaaggtccaaaaagcgtttatgacac |
15089166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 434
Target Start/End: Complemental strand, 25319165 - 25319118
Alignment:
| Q |
386 |
accatttaacattgaggtggaaggtctaaaaaccgtttataacaccaaa |
434 |
Q |
| |
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|||||||||||||||||||||||||| ||||| |||||| |||||||| |
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| T |
25319165 |
accatttaacattgaggtggaaggtc-aaaaagtgtttatgacaccaaa |
25319118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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