View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8691_low_8 (Length: 283)
Name: NF8691_low_8
Description: NF8691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8691_low_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 12 - 144
Target Start/End: Original strand, 10043816 - 10043947
Alignment:
| Q |
12 |
cacacacgcacataacaactccatcattttaaacgttagtcgctaacaggaggcacccccaagttcggtactacgtacatattacaaaattattgaagga |
111 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10043816 |
cacacacacacataacgactccatcattttaaacgttagtcgctaacaggaggcacccccaagttcggtactacgtacatattacaaaattattgaagga |
10043915 |
T |
|
| Q |
112 |
catgcaccgtgagtgcattttgttttacaatta |
144 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
|
|
| T |
10043916 |
catgcacc-tgagtgcattttgttttacaatta |
10043947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University