View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8691_low_9 (Length: 242)
Name: NF8691_low_9
Description: NF8691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8691_low_9 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 33 - 221
Target Start/End: Original strand, 21908530 - 21908718
Alignment:
| Q |
33 |
tataatgaaattatggtcaataagatagtggatcttatgatcaatagtttgggttttgttgacagatccaagagttagtcgaagccatcattttccaatg |
132 |
Q |
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| T |
21908530 |
tataatgaaattatggtcaataagatagtggatcttatgatcaatagtttgggttttgttgacagatccaagagttagtcgaagccatcattttccaatg |
21908629 |
T |
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| Q |
133 |
acccacaaggagtgcttccagaagttgggtattcttcctccaaagctagtgctcttatatggaccaaagtggttccaaatcctgtgatt |
221 |
Q |
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| T |
21908630 |
acccacaaggagtgcttccagaagttgggtattcttcctccaaaggtagtgctcttatatggaccaaagtggttccaaatcctgtgatt |
21908718 |
T |
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Target: scaffold0001 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 35 - 198
Target Start/End: Complemental strand, 59457 - 59297
Alignment:
| Q |
35 |
taatgaaattatggtcaataagata-gtggatcttatgatcaatagtttgggttttgttgacagatccaagagttagtcgaagccatcatttt-ccaatg |
132 |
Q |
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| T |
59457 |
taatgaatttatggtcaataagataagtggatcttatgattcatagtttgggttttgttgacagatccaagagttagtcgaagccatcatttttccaat- |
59359 |
T |
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| Q |
133 |
acccacaaggagtgcttccagaagttgggtattcttcctccaaagctagtgctcttatatggacca |
198 |
Q |
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| T |
59358 |
----acaaggagtgcttccagaagttgggtattcttcctccaaaggtagtgctcttacatggacca |
59297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 94 - 194
Target Start/End: Complemental strand, 11595796 - 11595695
Alignment:
| Q |
94 |
acagatccaagagttagtcgaagccatcatttt-ccaatgacccacaaggagtgcttccagaagttgggtattcttcctccaaagctagtgctcttatat |
192 |
Q |
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| T |
11595796 |
acagatccaagaattagttgaagccatcgttttgccaatgacccacaaagagcgcttccagaagttaggaatccgtcctcccaagggagtgctcttatat |
11595697 |
T |
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| Q |
193 |
gg |
194 |
Q |
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| T |
11595696 |
gg |
11595695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 61 - 194
Target Start/End: Original strand, 37081426 - 37081560
Alignment:
| Q |
61 |
tggatcttatgatcaatagtttgggttttgttgacagatccaagagttagtcgaagccatcatttt-ccaatgacccacaaggagtgcttccagaagttg |
159 |
Q |
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| T |
37081426 |
tggatcttctgatcaataactttgtttttgtcaacagatccaagaattggttgaagccatcgttttgccgatgacccacaaagagcgtttccagaagcta |
37081525 |
T |
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| Q |
160 |
ggtattcttcctccaaagctagtgctcttatatgg |
194 |
Q |
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| T |
37081526 |
ggaattcgtcctcccaagggagtgctcttatatgg |
37081560 |
T |
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