View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8692_low_3 (Length: 266)

Name: NF8692_low_3
Description: NF8692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8692_low_3
NF8692_low_3
[»] chr8 (12 HSPs)
chr8 (9-184)||(5890620-5890795)
chr8 (185-247)||(32536708-32536770)
chr8 (183-240)||(41859308-41859365)
chr8 (183-247)||(5034896-5034960)
chr8 (184-247)||(34992250-34992313)
chr8 (192-247)||(37639718-37639773)
chr8 (185-247)||(5035262-5035324)
chr8 (184-219)||(44098435-44098470)
chr8 (185-247)||(34992015-34992077)
chr8 (185-219)||(41859880-41859914)
chr8 (184-233)||(61453-61502)
chr8 (185-233)||(1365829-1365877)
[»] chr4 (31 HSPs)
chr4 (184-247)||(10425045-10425108)
chr4 (184-247)||(11417686-11417749)
chr4 (184-243)||(29651322-29651381)
chr4 (185-247)||(36865703-36865765)
chr4 (184-247)||(21166361-21166424)
chr4 (184-247)||(31836446-31836509)
chr4 (185-247)||(10424123-10424185)
chr4 (185-247)||(11417923-11417985)
chr4 (185-247)||(39523257-39523319)
chr4 (183-247)||(26611269-26611333)
chr4 (185-240)||(38694947-38695002)
chr4 (185-251)||(21165447-21165513)
chr4 (185-247)||(38694702-38694764)
chr4 (185-247)||(45230365-45230427)
chr4 (185-247)||(45235946-45236008)
chr4 (182-247)||(9939357-9939422)
chr4 (184-247)||(39522374-39522437)
chr4 (189-247)||(38143723-38143781)
chr4 (190-247)||(26610350-26610407)
chr4 (186-247)||(29650416-29650477)
chr4 (186-247)||(36864818-36864879)
chr4 (185-219)||(10424385-10424419)
chr4 (185-219)||(21166137-21166171)
chr4 (185-219)||(29650655-29650689)
chr4 (185-219)||(31836221-31836255)
chr4 (185-219)||(45235733-45235767)
chr4 (184-234)||(47377597-47377647)
chr4 (191-233)||(55159186-55159228)
chr4 (184-247)||(9939124-9939184)
chr4 (184-233)||(47198604-47198653)
chr4 (185-238)||(47376852-47376905)
[»] chr7 (17 HSPs)
chr7 (184-247)||(4261582-4261645)
chr7 (184-247)||(38071897-38071960)
chr7 (184-247)||(38778853-38778916)
chr7 (181-240)||(37468906-37468965)
chr7 (185-247)||(668179-668241)
chr7 (189-247)||(4261209-4261267)
chr7 (185-247)||(17145622-17145684)
chr7 (185-247)||(37468991-37469053)
chr7 (185-247)||(38779549-38779611)
chr7 (184-247)||(41194512-41194575)
chr7 (187-240)||(7677802-7677855)
chr7 (184-247)||(37864293-37864356)
chr7 (185-247)||(669089-669151)
chr7 (185-247)||(17145858-17145920)
chr7 (185-247)||(38072277-38072339)
chr7 (189-247)||(7677421-7677479)
chr7 (186-219)||(668420-668453)
[»] chr2 (11 HSPs)
chr2 (185-247)||(21471940-21472002)
chr2 (184-247)||(21471016-21471079)
chr2 (184-247)||(37547997-37548060)
chr2 (184-247)||(14573985-14574048)
chr2 (184-247)||(38834622-38834685)
chr2 (185-247)||(13134318-13134380)
chr2 (185-247)||(14573261-14573323)
chr2 (185-247)||(4479688-4479750)
chr2 (184-247)||(38834386-38834449)
chr2 (184-219)||(1164790-1164825)
chr2 (185-233)||(33433160-33433208)
[»] chr1 (21 HSPs)
chr1 (185-247)||(9948873-9948935)
chr1 (182-247)||(43737964-43738029)
chr1 (185-247)||(16270207-16270269)
chr1 (185-247)||(16271134-16271196)
chr1 (185-247)||(23440851-23440913)
chr1 (187-247)||(38931233-38931293)
chr1 (184-240)||(51974436-51974492)
chr1 (184-247)||(48972431-48972494)
chr1 (185-247)||(193850-193912)
chr1 (185-247)||(43737729-43737791)
chr1 (185-247)||(9947995-9948057)
chr1 (185-247)||(23440617-23440679)
chr1 (185-247)||(38930312-38930374)
chr1 (185-247)||(50827077-50827138)
chr1 (185-242)||(48971705-48971762)
chr1 (185-240)||(51975220-51975275)
chr1 (201-247)||(6075990-6076036)
chr1 (185-219)||(16270901-16270935)
chr1 (185-219)||(38930574-38930608)
chr1 (183-233)||(51987825-51987875)
chr1 (185-233)||(8560839-8560887)
[»] chr6 (19 HSPs)
chr6 (182-247)||(7193335-7193400)
chr6 (185-247)||(22579935-22579997)
chr6 (185-247)||(33480614-33480676)
chr6 (185-247)||(3543049-3543111)
chr6 (185-243)||(15083308-15083366)
chr6 (189-247)||(22582465-22582523)
chr6 (189-247)||(22587296-22587354)
chr6 (185-247)||(33018167-33018229)
chr6 (187-247)||(33479698-33479758)
chr6 (184-247)||(7193564-7193627)
chr6 (192-247)||(33018402-33018457)
chr6 (187-240)||(3542816-3542869)
chr6 (190-247)||(15082402-15082459)
chr6 (185-233)||(7531829-7531877)
chr6 (185-219)||(15082638-15082672)
chr6 (185-219)||(22580597-22580631)
chr6 (185-219)||(22587083-22587117)
chr6 (185-219)||(33479938-33479972)
chr6 (185-238)||(24126713-24126766)
[»] chr3 (20 HSPs)
chr3 (186-247)||(38922744-38922805)
chr3 (185-247)||(19132563-19132625)
chr3 (184-240)||(36750430-36750486)
chr3 (184-247)||(3971888-3971951)
chr3 (184-247)||(3997927-3997990)
chr3 (185-247)||(19132798-19132860)
chr3 (184-240)||(41756425-41756481)
chr3 (184-247)||(32490181-32490244)
chr3 (185-247)||(32489946-32490008)
chr3 (185-243)||(45242977-45243035)
chr3 (186-247)||(45242067-45242128)
chr3 (185-232)||(31556217-31556264)
chr3 (184-247)||(44687149-44687212)
chr3 (185-237)||(38923661-38923713)
chr3 (185-220)||(52491891-52491926)
chr3 (190-240)||(36750050-36750100)
chr3 (185-219)||(38923438-38923472)
chr3 (185-219)||(45242307-45242341)
chr3 (185-234)||(49757181-49757230)
chr3 (184-240)||(41755498-41755554)
[»] chr5 (14 HSPs)
chr5 (184-247)||(8204119-8204182)
chr5 (185-247)||(15184003-15184065)
chr5 (184-247)||(33002802-33002865)
chr5 (182-247)||(12190144-12190209)
chr5 (182-247)||(33001929-33001994)
chr5 (184-240)||(36626623-36626679)
chr5 (184-247)||(8040194-8040257)
chr5 (185-247)||(686417-686478)
chr5 (185-232)||(39950404-39950451)
chr5 (176-247)||(15183079-15183151)
chr5 (184-247)||(8040430-8040493)
chr5 (185-219)||(686667-686701)
chr5 (185-219)||(39950446-39950480)
chr5 (186-247)||(687334-687395)
[»] scaffold0041 (2 HSPs)
scaffold0041 (185-247)||(27221-27283)
scaffold0041 (185-247)||(27561-27623)
[»] scaffold0311 (1 HSPs)
scaffold0311 (184-237)||(156-209)


Alignment Details
Target: chr8 (Bit Score: 160; Significance: 2e-85; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 9 - 184
Target Start/End: Complemental strand, 5890795 - 5890620
Alignment:
Q  9 agtgagatgaatataaattgatatatgtatacttttctgatcagaaatgaaatttatcaaagaagacaacagatctcatgtcatgatgaattgtggaaaa 108  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  5890795 agtgacatgaatataaattgatatatgtatacttttctgatcataaatgaaatttatcaaagaagacaacagatctcatgtaatgatgaattgtggaaaa 5890696  T
Q  109 agggtgctttgtgaatgaaggtatttggctgaaattcatgatggagacgatgcttcattgtgacgatgtattatca 184  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5890695 aaggtgctttgtgaatgaaggtatttggctgaaattcatgatggagacgatgcttcattgtgacgatgtattatca 5890620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 32536708 - 32536770
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    ||||||||||||||||||||| ||||||||||||| | |||||||||||||||||| ||||||    
T  32536708 ggtgccatttaatttaggaaatgagagttctttcccaccatgggaaagttgatcatgtccatt 32536770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 183 - 240
Target Start/End: Original strand, 41859308 - 41859365
Alignment:
Q  183 caggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcat 240  Q
    ||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||    
T  41859308 caggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcat 41859365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 183 - 247
Target Start/End: Original strand, 5034896 - 5034960
Alignment:
Q  183 caggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    ||||||||||||||||| ||||||||||||||||| | | |||||||||||||||||| ||||||    
T  5034896 caggtgccatttaatttgggaaaggagagttcttttccaccatgggaaagttgatcatgtccatt 5034960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 184 - 247
Target Start/End: Complemental strand, 34992313 - 34992250
Alignment:
Q  184 aggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    |||||||||||||||| ||||||||||||| ||||| | |||||||||||||||||| ||||||    
T  34992313 aggtgccatttaatttgggaaaggagagttttttcccaccatgggaaagttgatcatgtccatt 34992250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 247
Target Start/End: Original strand, 37639718 - 37639773
Alignment:
Q  192 tttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    |||||||| ||||||||||||||||||| | |||||||||||||||||||| ||||    
T  37639718 tttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatattcatt 37639773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 5035324 - 5035262
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    ||||||||||||||| ||||||||||||||||| | | ||| |||||||||||||| ||||||    
T  5035324 ggtgccatttaatttgggaaaggagagttcttttccaccataggaaagttgatcatgtccatt 5035262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 219
Target Start/End: Complemental strand, 44098470 - 44098435
Alignment:
Q  184 aggtgccatttaatttaggaaaggagagttctttcc 219  Q
    |||||||||||||||| |||||||||||||||||||    
T  44098470 aggtgccatttaatttgggaaaggagagttctttcc 44098435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 34992015 - 34992077
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    ||||||||||||||| ||||| ||||||| ||| | | ||||| |||||||||||| ||||||    
T  34992015 ggtgccatttaatttgggaaacgagagttattttccaccatggaaaagttgatcatgtccatt 34992077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 219
Target Start/End: Original strand, 41859880 - 41859914
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcc 219  Q
    ||||||||||||||||| |||||||||||||||||    
T  41859880 ggtgccatttaatttagaaaaggagagttctttcc 41859914  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 233
Target Start/End: Original strand, 61453 - 61502
Alignment:
Q  184 aggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagt 233  Q
    ||||| |||||||||| |||||||||| |||||||| | |||||||||||    
T  61453 aggtggcatttaatttgggaaaggagacttctttcccaccatgggaaagt 61502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 233
Target Start/End: Original strand, 1365829 - 1365877
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagt 233  Q
    |||| |||||||||| |||||||||| |||||||| | |||||||||||    
T  1365829 ggtggcatttaatttgggaaaggagacttctttcccaccatgggaaagt 1365877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 184 - 247
Target Start/End: Complemental strand, 10425108 - 10425045
Alignment:
Q  184 aggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  10425108 aggtgccatttaatttaggaaaggagagttctttcccaccatgggaaagttgatcatatccatt 10425045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 184 - 247
Target Start/End: Original strand, 11417686 - 11417749
Alignment:
Q  184 aggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    |||||||||||||||| ||||||||||||||||||| | |||||||||||||||||| ||||||    
T  11417686 aggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtccatt 11417749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 184 - 243
Target Start/End: Complemental strand, 29651381 - 29651322
Alignment:
Q  184 aggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatc 243  Q
    |||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||    
T  29651381 aggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatatc 29651322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 36865765 - 36865703
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    |||| |||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||    
T  36865765 ggtgacatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatatccatt 36865703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 184 - 247
Target Start/End: Complemental strand, 21166424 - 21166361
Alignment:
Q  184 aggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    ||||||||||||||||  |||||||||||||||||| | |||||||||||||||||| ||||||    
T  21166424 aggtgccatttaatttgagaaaggagagttctttcccatcatgggaaagttgatcatgtccatt 21166361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 184 - 247
Target Start/End: Complemental strand, 31836509 - 31836446
Alignment:
Q  184 aggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    ||||||||||||||||  |||||||||||||||||| | |||||||||||||||||| ||||||    
T  31836509 aggtgccatttaatttgagaaaggagagttctttcccaccatgggaaagttgatcatgtccatt 31836446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 10424123 - 10424185
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    ||||||||||||||| ||||||||||||||||||| | ||| |||||||||||||| ||||||    
T  10424123 ggtgccatttaatttgggaaaggagagttctttcccaccataggaaagttgatcatgtccatt 10424185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 11417985 - 11417923
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    |||| |||||||||| ||||||||||||||||||| | |||||||||||||||||| ||||||    
T  11417985 ggtgtcatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtccatt 11417923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 39523319 - 39523257
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    ||||||||||||||| ||||||||||||||||| | | |||||||||||||||||| ||||||    
T  39523319 ggtgccatttaatttgggaaaggagagttcttttccaccatgggaaagttgatcatgtccatt 39523257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 183 - 247
Target Start/End: Complemental strand, 26611333 - 26611269
Alignment:
Q  183 caggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    |||||| |||||||||| ||||||||||||| ||||| | |||||||||||||||||| ||||||    
T  26611333 caggtgtcatttaatttgggaaaggagagttttttcccaccatgggaaagttgatcatgtccatt 26611269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 185 - 240
Target Start/End: Complemental strand, 38695002 - 38694947
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcat 240  Q
    ||||||||||||||| ||||||||||||||||||| | |||| |||||||||||||    
T  38695002 ggtgccatttaatttgggaaaggagagttctttcccaccatgagaaagttgatcat 38694947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 251
Target Start/End: Original strand, 21165447 - 21165513
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatttgat 251  Q
    ||||||||||||||| |||||| | |||||||||| | |||| ||||||||||||| ||||||||||    
T  21165447 ggtgccatttaatttgggaaagaatagttctttcccaccatgagaaagttgatcatgtccatttgat 21165513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 38694702 - 38694764
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    ||||||||||||||| | ||||||||||||||||| | ||||| |||||||||||||| ||||    
T  38694702 ggtgccatttaatttggaaaaggagagttctttcccagcatggaaaagttgatcatattcatt 38694764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 45230365 - 45230427
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    ||||||||||||||  ||||| ||||||||||||| | |||||||||||||||||||| ||||    
T  45230365 ggtgccatttaattcgggaaaagagagttctttcccaccatgggaaagttgatcatattcatt 45230427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 45236008 - 45235946
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    ||||||||||||||| | ||||||||||||||||| | |||||||||||| ||||| ||||||    
T  45236008 ggtgccatttaatttggaaaaggagagttctttcccaccatgggaaagttaatcatgtccatt 45235946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 9939422 - 9939357
Alignment:
Q  182 tcaggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    ||||||||||||||||||  |||||| ||||||||||| | ||||| |||||||||||| ||||||    
T  9939422 tcaggtgccatttaatttgagaaaggggagttctttcccaccatggaaaagttgatcatgtccatt 9939357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 247
Target Start/End: Original strand, 39522374 - 39522437
Alignment:
Q  184 aggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    ||||| |||||||||| |||||||| ||||||||   | |||||||||||||||||||||||||    
T  39522374 aggtgtcatttaatttgggaaaggatagttctttttcaccatgggaaagttgatcatatccatt 39522437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 38143781 - 38143723
Alignment:
Q  189 ccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    ||||||||||| ||||| ||||||||||||| | ||||||||||||| |||| ||||||    
T  38143781 ccatttaatttgggaaatgagagttctttcccaccatgggaaagttggtcatgtccatt 38143723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 247
Target Start/End: Original strand, 26610350 - 26610407
Alignment:
Q  190 catttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    |||||||||| ||||| ||||||||||||| | ||||||||| |||||||| ||||||    
T  26610350 catttaatttgggaaatgagagttctttcccaccatgggaaaattgatcatgtccatt 26610407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 247
Target Start/End: Original strand, 29650416 - 29650477
Alignment:
Q  186 gtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    |||||||||||||| ||||| ||||||||||| | | | |||||||||||||||| ||||||    
T  29650416 gtgccatttaatttgggaaatgagagttcttttccatcttgggaaagttgatcatgtccatt 29650477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 247
Target Start/End: Original strand, 36864818 - 36864879
Alignment:
Q  186 gtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    |||| ||||||||| ||||||||||||||||||  | |||| ||||||||||||| ||||||    
T  36864818 gtgctatttaatttgggaaaggagagttctttctcaccatgagaaagttgatcatgtccatt 36864879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 219
Target Start/End: Complemental strand, 10424419 - 10424385
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcc 219  Q
    ||||||||||||||| |||||||||||||||||||    
T  10424419 ggtgccatttaatttgggaaaggagagttctttcc 10424385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 219
Target Start/End: Original strand, 21166137 - 21166171
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcc 219  Q
    ||||||||||||||| |||||||||||||||||||    
T  21166137 ggtgccatttaatttgggaaaggagagttctttcc 21166171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 219
Target Start/End: Complemental strand, 29650689 - 29650655
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcc 219  Q
    ||||||||||||||| |||||||||||||||||||    
T  29650689 ggtgccatttaatttgggaaaggagagttctttcc 29650655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 219
Target Start/End: Original strand, 31836221 - 31836255
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcc 219  Q
    ||||||||||||||| |||||||||||||||||||    
T  31836221 ggtgccatttaatttgggaaaggagagttctttcc 31836255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 219
Target Start/End: Original strand, 45235733 - 45235767
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcc 219  Q
    ||||||||||||||| |||||||||||||||||||    
T  45235733 ggtgccatttaatttgggaaaggagagttctttcc 45235767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 234
Target Start/End: Complemental strand, 47377647 - 47377597
Alignment:
Q  184 aggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagtt 234  Q
    |||||||||||||||| ||||||| ||||| ||||| | ||||||||||||    
T  47377647 aggtgccatttaatttgggaaaggggagttgtttcccaccatgggaaagtt 47377597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 233
Target Start/End: Original strand, 55159186 - 55159228
Alignment:
Q  191 atttaatttaggaaaggagagttctttcctaacatgggaaagt 233  Q
    ||||||||| |||||||||| |||||||||| |||||||||||    
T  55159186 atttaatttgggaaaggagacttctttcctaccatgggaaagt 55159228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 247
Target Start/End: Original strand, 9939124 - 9939184
Alignment:
Q  184 aggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    ||||| |||||||||| |||||| |||||||||| |||   |||||||||||||||| ||||||    
T  9939124 aggtgtcatttaatttgggaaagtagagttcttttcta---tgggaaagttgatcatgtccatt 9939184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 233
Target Start/End: Original strand, 47198604 - 47198653
Alignment:
Q  184 aggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagt 233  Q
    ||||| |||||||||| |||||||||| |||||||| | |||||||||||    
T  47198604 aggtgacatttaatttgggaaaggagacttctttcccaccatgggaaagt 47198653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 47376852 - 47376905
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatc 238  Q
    |||| |||||||||| ||||||| ||||| ||||| | ||||||||||||||||    
T  47376852 ggtggcatttaatttgggaaaggggagttgtttcccatcatgggaaagttgatc 47376905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 7e-21; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 184 - 247
Target Start/End: Complemental strand, 4261645 - 4261582
Alignment:
Q  184 aggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||    
T  4261645 aggtgccatttaatttaggaaaggagagttctttcccaccatgggaaagttgatcatctccatt 4261582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 184 - 247
Target Start/End: Original strand, 38071897 - 38071960
Alignment:
Q  184 aggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||    
T  38071897 aggtgccatttaatttaggaaaggagagttctttcccatcatgggaaagttgatcatgtccatt 38071960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 184 - 247
Target Start/End: Original strand, 38778853 - 38778916
Alignment:
Q  184 aggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    |||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||    
T  38778853 aggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatatccatt 38778916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 181 - 240
Target Start/End: Original strand, 37468906 - 37468965
Alignment:
Q  181 atcaggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcat 240  Q
    ||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||    
T  37468906 atcaggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcat 37468965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 668179 - 668241
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    ||||||||||||||| ||||||||||||||||||| | |||||||||||||||||| ||||||    
T  668179 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtccatt 668241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 4261209 - 4261267
Alignment:
Q  189 ccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||    
T  4261209 ccatttaatttaggaaaggagagttcttttctaccatgggaaagttgatcatgtccatt 4261267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 17145622 - 17145684
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    ||||||||||||||| ||||||||||||||||||| | |||||||||||||||||| ||||||    
T  17145622 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtccatt 17145684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 37469053 - 37468991
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    ||||||||||||||| ||||||||||||||||||| | |||||||||||||||||| ||||||    
T  37469053 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtccatt 37468991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 38779611 - 38779549
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    ||||||||||||||| ||||||||||||||||||| | |||||||||||||||||| ||||||    
T  38779611 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtccatt 38779549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 184 - 247
Target Start/End: Original strand, 41194512 - 41194575
Alignment:
Q  184 aggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    |||||||||||||||| ||||||||||||||||||| | |||||||||||| ||||| ||||||    
T  41194512 aggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttaatcatgtccatt 41194575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 187 - 240
Target Start/End: Complemental strand, 7677855 - 7677802
Alignment:
Q  187 tgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcat 240  Q
    ||||||||||||| ||||||||||||||||||| | ||||||||||||||||||    
T  7677855 tgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcat 7677802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 247
Target Start/End: Complemental strand, 37864356 - 37864293
Alignment:
Q  184 aggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    |||||||||||||||| |||||  |||||||||||| | |||||||||||||||||| ||||||    
T  37864356 aggtgccatttaatttgggaaataagagttctttcccaccatgggaaagttgatcatgtccatt 37864293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 669151 - 669089
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    ||||||||||||||| ||||| ||||||| ||||| | ||| |||||||||||||||||||||    
T  669151 ggtgccatttaatttgggaaatgagagttttttcccaccataggaaagttgatcatatccatt 669089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 17145920 - 17145858
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    ||||||||||||||| |||||||||||||||||  ||  ||||||||||||||||| ||||||    
T  17145920 ggtgccatttaatttgggaaaggagagttcttttttactatgggaaagttgatcatgtccatt 17145858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 38072339 - 38072277
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    ||||||||||||||| ||||| ||||||||||| | | |||||||||||||||||| ||||||    
T  38072339 ggtgccatttaatttgggaaatgagagttcttttccaccatgggaaagttgatcatgtccatt 38072277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 7677421 - 7677479
Alignment:
Q  189 ccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    ||||||||||| |||||||||| |||||||| | ||||  |||||||||||| ||||||    
T  7677421 ccatttaatttgggaaaggagaattctttcccaccatgaaaaagttgatcatgtccatt 7677479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 219
Target Start/End: Complemental strand, 668453 - 668420
Alignment:
Q  186 gtgccatttaatttaggaaaggagagttctttcc 219  Q
    |||||||||||||| |||||||||||||||||||    
T  668453 gtgccatttaatttgggaaaggagagttctttcc 668420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 21472002 - 21471940
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    ||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||    
T  21472002 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatatccatt 21471940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 184 - 247
Target Start/End: Original strand, 21471016 - 21471079
Alignment:
Q  184 aggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    |||||||||||||||| ||||||||||||||||||| | |||||||||||||||||| ||||||    
T  21471016 aggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtccatt 21471079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 184 - 247
Target Start/End: Original strand, 37547997 - 37548060
Alignment:
Q  184 aggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    |||||||||||||||| ||||||||||||||||||| | |||||||||||||||||| ||||||    
T  37547997 aggtgccatttaatttgggaaaggagagttctttcccatcatgggaaagttgatcatgtccatt 37548060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 184 - 247
Target Start/End: Complemental strand, 14574048 - 14573985
Alignment:
Q  184 aggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    |||||||||||||||| ||||||||||||||||||| | |||  ||||||||||||||||||||    
T  14574048 aggtgccatttaatttgggaaaggagagttctttcccaccataagaaagttgatcatatccatt 14573985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 184 - 247
Target Start/End: Complemental strand, 38834685 - 38834622
Alignment:
Q  184 aggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    |||||||||||||||| ||||||||||||| ||||||| | |||||||||||||||| ||||||    
T  38834685 aggtgccatttaatttgggaaaggagagttttttcctaccgtgggaaagttgatcatgtccatt 38834622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 13134318 - 13134380
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    ||||||||||||||| ||||||||||||||||||| | ||| |||||||||||||| ||||||    
T  13134318 ggtgccatttaatttgggaaaggagagttctttcccaccataggaaagttgatcatgtccatt 13134380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 14573261 - 14573323
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    ||||||||||||||| ||||||||||||| ||||| | |||||||||||||||||| ||||||    
T  14573261 ggtgccatttaatttgggaaaggagagttttttcccaccatgggaaagttgatcatgtccatt 14573323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 4479750 - 4479688
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    ||||||||||||||| ||||||||||||||||||  | |||||||||||| ||||| ||||||    
T  4479750 ggtgccatttaatttgggaaaggagagttctttctcaccatgggaaagttaatcatgtccatt 4479688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 247
Target Start/End: Original strand, 38834386 - 38834449
Alignment:
Q  184 aggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    |||||||||||||||| ||||||||| || |||||| | || ||||||||||||||| ||||||    
T  38834386 aggtgccatttaatttgggaaaggagggtactttcccaccacgggaaagttgatcatgtccatt 38834449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 219
Target Start/End: Complemental strand, 1164825 - 1164790
Alignment:
Q  184 aggtgccatttaatttaggaaaggagagttctttcc 219  Q
    |||||||||||||||| |||||||||||||||||||    
T  1164825 aggtgccatttaatttgggaaaggagagttctttcc 1164790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 233
Target Start/End: Complemental strand, 33433208 - 33433160
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagt 233  Q
    |||||| ||||||||  |||||||||||||||||| | |||||||||||    
T  33433208 ggtgccgtttaatttgagaaaggagagttctttcccaccatgggaaagt 33433160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 9948935 - 9948873
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||    
T  9948935 ggtgccatttaatttaggaaaggagagttctttcccaccatgggaaagttgatcatgtccatt 9948873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 43738029 - 43737964
Alignment:
Q  182 tcaggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    |||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||| ||||||    
T  43738029 tcaggtgccatttaatttgggaaaggagagttctttcccatcatgggaaagttgatcatgtccatt 43737964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 16270207 - 16270269
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    ||||||||||||||| ||||||||||||||||||| | |||||||||||||||||| ||||||    
T  16270207 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtccatt 16270269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 16271196 - 16271134
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    ||||||||||||||||||||||||||||||||||  | |||||||||||||||||| ||||||    
T  16271196 ggtgccatttaatttaggaaaggagagttctttctcatcatgggaaagttgatcatgtccatt 16271134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 23440913 - 23440851
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    ||||||||||||||| ||||||||||||||||||| | |||||||||||||||||| ||||||    
T  23440913 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtccatt 23440851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 247
Target Start/End: Complemental strand, 38931293 - 38931233
Alignment:
Q  187 tgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    ||||||||||||| |||||| |||||||||| ||| |||||||||||||||||||||||||    
T  38931293 tgccatttaatttgggaaagaagagttcttttctaccatgggaaagttgatcatatccatt 38931233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 184 - 240
Target Start/End: Original strand, 51974436 - 51974492
Alignment:
Q  184 aggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcat 240  Q
    |||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||    
T  51974436 aggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcat 51974492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 184 - 247
Target Start/End: Complemental strand, 48972494 - 48972431
Alignment:
Q  184 aggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    |||||||||||||||| ||||||||||||||||||| | ||||| |||||||||||| ||||||    
T  48972494 aggtgccatttaatttgggaaaggagagttctttcccaccatggaaaagttgatcatgtccatt 48972431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 193850 - 193912
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    ||||||||||||||| ||||||||||||||||||| | |||| ||||||| ||||| ||||||    
T  193850 ggtgccatttaatttgggaaaggagagttctttcccaccatgagaaagttaatcatgtccatt 193912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 43737729 - 43737791
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    ||||||||||||||| |||||| |||||| ||||| | |||||||||||||||||| ||||||    
T  43737729 ggtgccatttaatttgggaaagtagagttatttcccaccatgggaaagttgatcatgtccatt 43737791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 9947995 - 9948057
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    ||||||||||||||| |||||| | |||||||||| | ||||| |||||||||||||| ||||    
T  9947995 ggtgccatttaatttgggaaagaaaagttctttcccaccatggaaaagttgatcatattcatt 9948057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 23440617 - 23440679
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    ||||||||||||||| ||||||||||||||||||| |  |||| ||||||||| || ||||||    
T  23440617 ggtgccatttaatttgggaaaggagagttctttccaactatggaaaagttgattatgtccatt 23440679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 38930312 - 38930374
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    |||| |||||||||| |||||||| ||||||||   | |||||||||||||||||||||||||    
T  38930312 ggtgtcatttaatttgggaaaggaaagttctttttcaccatgggaaagttgatcatatccatt 38930374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 50827138 - 50827077
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    |||||||||||||||  |||||||||||| ||||| | |||||||||||||||||| ||||||    
T  50827138 ggtgccatttaatttgagaaaggagagtt-tttcccaccatgggaaagttgatcatgtccatt 50827077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 242
Target Start/End: Original strand, 48971705 - 48971762
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatat 242  Q
    |||| |||||||||| ||||||||||||||||||| |  ||| |||||||||||||||    
T  48971705 ggtgtcatttaatttgggaaaggagagttctttcccacaatgagaaagttgatcatat 48971762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 240
Target Start/End: Complemental strand, 51975275 - 51975220
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcat 240  Q
    ||||||||||||||| |||||||||||||||||   |  |||||||||||||||||    
T  51975275 ggtgccatttaatttgggaaaggagagttctttttcactatgggaaagttgatcat 51975220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 247
Target Start/End: Original strand, 6075990 - 6076036
Alignment:
Q  201 ggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    ||||||||||||||||| ||| |||| ||||||||||||| ||||||    
T  6075990 ggaaaggagagttcttttctaccatgagaaagttgatcatgtccatt 6076036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 219
Target Start/End: Original strand, 16270901 - 16270935
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcc 219  Q
    ||||||||||||||| |||||||||||||||||||    
T  16270901 ggtgccatttaatttgggaaaggagagttctttcc 16270935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 219
Target Start/End: Complemental strand, 38930608 - 38930574
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcc 219  Q
    ||||||||||||||| |||||||||||||||||||    
T  38930608 ggtgccatttaatttgggaaaggagagttctttcc 38930574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 233
Target Start/End: Original strand, 51987825 - 51987875
Alignment:
Q  183 caggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagt 233  Q
    |||||| |||||||||| |||||||||| |||||||| | |||||||||||    
T  51987825 caggtggcatttaatttgggaaaggagacttctttcccaccatgggaaagt 51987875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 233
Target Start/End: Original strand, 8560839 - 8560887
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagt 233  Q
    |||| |||||||||| |||||||||| |||||||| | |||||||||||    
T  8560839 ggtgacatttaatttgggaaaggagacttctttcccatcatgggaaagt 8560887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 7193335 - 7193400
Alignment:
Q  182 tcaggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    |||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||| ||||||    
T  7193335 tcaggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatctccatt 7193400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 22579935 - 22579997
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    ||||||||||||||| ||||||||||||||||| | | |||||||||||||||||||||||||    
T  22579935 ggtgccatttaatttgggaaaggagagttcttttccaccatgggaaagttgatcatatccatt 22579997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 33480676 - 33480614
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    ||||||||||||||| ||||||||||||||||||| | |||||||||||||||||| ||||||    
T  33480676 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtccatt 33480614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 3543111 - 3543049
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    ||||||||||||||| ||||||||||||| ||||| | |||||||||||||||||| ||||||    
T  3543111 ggtgccatttaatttgggaaaggagagttttttcccaccatgggaaagttgatcatgtccatt 3543049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 15083366 - 15083308
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatc 243  Q
    ||||||||||||||| ||||||||||||||||||| | |||| ||||||||||||||||    
T  15083366 ggtgccatttaatttgggaaaggagagttctttcccaccatgagaaagttgatcatatc 15083308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 22582523 - 22582465
Alignment:
Q  189 ccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    ||||||||||| ||||||||||||||||||| | |||||||||||||||||| ||||||    
T  22582523 ccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtccatt 22582465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 22587354 - 22587296
Alignment:
Q  189 ccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    ||||||||||| ||||||||||||||||||| | |||||||||||||||||| ||||||    
T  22587354 ccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtccatt 22587296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 33018167 - 33018229
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    ||||||||||||||| ||||||||||||||||||| | ||| |||||||||||||| ||||||    
T  33018167 ggtgccatttaatttgggaaaggagagttctttcccatcattggaaagttgatcatgtccatt 33018229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 33479698 - 33479758
Alignment:
Q  187 tgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    ||||||||||||| ||||||||||||| ||||| | |||||||||||||||||| ||||||    
T  33479698 tgccatttaatttgggaaaggagagttatttcccaccatgggaaagttgatcatgtccatt 33479758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 247
Target Start/End: Complemental strand, 7193627 - 7193564
Alignment:
Q  184 aggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    ||||||||||||||||  ||||| |||||||||| | | |||||||||||||||||||||||||    
T  7193627 aggtgccatttaatttgagaaagtagagttcttttccatcatgggaaagttgatcatatccatt 7193564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 247
Target Start/End: Complemental strand, 33018457 - 33018402
Alignment:
Q  192 tttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    |||||||| ||||||||||||||||||| | |||||||||||||||||| ||||||    
T  33018457 tttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtccatt 33018402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 240
Target Start/End: Original strand, 3542816 - 3542869
Alignment:
Q  187 tgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcat 240  Q
    ||||||||||||| ||||||||||||| ||||| | ||||||||||||||||||    
T  3542816 tgccatttaatttgggaaaggagagttttttcccaccatgggaaagttgatcat 3542869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 247
Target Start/End: Original strand, 15082402 - 15082459
Alignment:
Q  190 catttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    |||||||||| ||||| ||||||||||| | | |||||||||||||||||| ||||||    
T  15082402 catttaatttgggaaatgagagttcttttccatcatgggaaagttgatcatgtccatt 15082459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 233
Target Start/End: Original strand, 7531829 - 7531877
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagt 233  Q
    |||| |||||||||| |||||||||| |||||||||| |||||||||||    
T  7531829 ggtggcatttaatttgggaaaggagacttctttcctaccatgggaaagt 7531877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 219
Target Start/End: Complemental strand, 15082672 - 15082638
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcc 219  Q
    ||||||||||||||| |||||||||||||||||||    
T  15082672 ggtgccatttaatttgggaaaggagagttctttcc 15082638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 219
Target Start/End: Original strand, 22580597 - 22580631
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcc 219  Q
    ||||||||||||||| |||||||||||||||||||    
T  22580597 ggtgccatttaatttgggaaaggagagttctttcc 22580631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 219
Target Start/End: Original strand, 22587083 - 22587117
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcc 219  Q
    ||||||||||||||| |||||||||||||||||||    
T  22587083 ggtgccatttaatttgggaaaggagagttctttcc 22587117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 219
Target Start/End: Complemental strand, 33479972 - 33479938
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcc 219  Q
    ||||||||||||||| |||||||||||||||||||    
T  33479972 ggtgccatttaatttgggaaaggagagttctttcc 33479938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 238
Target Start/End: Complemental strand, 24126766 - 24126713
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatc 238  Q
    |||| |||||||||| ||||||| ||||| ||||| | ||||||||||||||||    
T  24126766 ggtggcatttaatttgggaaaggggagttgtttcccatcatgggaaagttgatc 24126713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 186 - 247
Target Start/End: Original strand, 38922744 - 38922805
Alignment:
Q  186 gtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    |||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||    
T  38922744 gtgccatttaatttgggaaaggagagttatttcctaccatgggaaagttgatcatatccatt 38922805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 19132563 - 19132625
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    ||||||||||||||| |||||||||||||||||||||  ||||||||||||||||| ||||||    
T  19132563 ggtgccatttaatttgggaaaggagagttctttcctactatgggaaagttgatcatgtccatt 19132625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 184 - 240
Target Start/End: Complemental strand, 36750486 - 36750430
Alignment:
Q  184 aggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcat 240  Q
    |||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||    
T  36750486 aggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcat 36750430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 184 - 247
Target Start/End: Complemental strand, 3971951 - 3971888
Alignment:
Q  184 aggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    |||||||||||||||||||||| || |||||||||| |  ||||||||||||||||||||||||    
T  3971951 aggtgccatttaatttaggaaatgaaagttctttcccatgatgggaaagttgatcatatccatt 3971888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 184 - 247
Target Start/End: Original strand, 3997927 - 3997990
Alignment:
Q  184 aggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    |||||||||||||||||||||| || |||||||||| |  ||||||||||||||||||||||||    
T  3997927 aggtgccatttaatttaggaaatgaaagttctttcccatgatgggaaagttgatcatatccatt 3997990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 19132860 - 19132798
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    ||||||||||||||| |||||||| |||||||||| | |||||||||||||||||| ||||||    
T  19132860 ggtgccatttaatttgggaaaggaaagttctttcccaccatgggaaagttgatcatgtccatt 19132798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 184 - 240
Target Start/End: Complemental strand, 41756481 - 41756425
Alignment:
Q  184 aggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcat 240  Q
    ||||| ||||||| |||||||||||||||||||||| | ||||||||||||||||||    
T  41756481 aggtgtcatttaagttaggaaaggagagttctttcccatcatgggaaagttgatcat 41756425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 247
Target Start/End: Complemental strand, 32490244 - 32490181
Alignment:
Q  184 aggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    |||| ||||||||||| ||||||||||||||||||| | ||||| |||||||||||| ||||||    
T  32490244 aggtaccatttaatttgggaaaggagagttctttcccaccatggaaaagttgatcatgtccatt 32490181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 32489946 - 32490008
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    ||||||||||||||| |||||||||| |||||| | | |||||||||||||||||| ||||||    
T  32489946 ggtgccatttaatttgggaaaggagaattcttttccaccatgggaaagttgatcatgtccatt 32490008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 45243035 - 45242977
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatc 243  Q
    ||||||||||||||| |||||| |||||||||| | | |||||||||||||||||||||    
T  45243035 ggtgccatttaatttgggaaagaagagttcttttccaccatgggaaagttgatcatatc 45242977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 247
Target Start/End: Original strand, 45242067 - 45242128
Alignment:
Q  186 gtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    |||||||||||||| ||||| ||||||||||| | | |||||||||||||||||| ||||||    
T  45242067 gtgccatttaatttgggaaatgagagttcttttccatcatgggaaagttgatcatgtccatt 45242128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 232
Target Start/End: Complemental strand, 31556264 - 31556217
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcctaacatgggaaag 232  Q
    ||||||||||||||| ||||||||||||||||||| | ||||||||||    
T  31556264 ggtgccatttaatttgggaaaggagagttctttcccatcatgggaaag 31556217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 247
Target Start/End: Complemental strand, 44687212 - 44687149
Alignment:
Q  184 aggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    |||||||||||||||| |||||||||| |||||| | | ||||| |||||||||||||| ||||    
T  44687212 aggtgccatttaatttgggaaaggagaattcttttccaccatggaaaagttgatcatattcatt 44687149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 237
Target Start/End: Complemental strand, 38923713 - 38923661
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgat 237  Q
    ||||||||||||||| ||||| ||||||||||||| | ||||| |||||||||    
T  38923713 ggtgccatttaatttgggaaatgagagttctttcccaccatggaaaagttgat 38923661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 52491891 - 52491926
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcct 220  Q
    ||||||||||||||| ||||||||||||||||||||    
T  52491891 ggtgccatttaatttgggaaaggagagttctttcct 52491926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 240
Target Start/End: Original strand, 36750050 - 36750100
Alignment:
Q  190 catttaatttaggaaaggagagttctttcctaacatgggaaagttgatcat 240  Q
    |||||||||| ||||||||||||||||| | | ||||| ||||||||||||    
T  36750050 catttaatttgggaaaggagagttcttttccaccatggaaaagttgatcat 36750100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 219
Target Start/End: Original strand, 38923438 - 38923472
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcc 219  Q
    ||||||||||||||| |||||||||||||||||||    
T  38923438 ggtgccatttaatttgggaaaggagagttctttcc 38923472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 219
Target Start/End: Complemental strand, 45242341 - 45242307
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcc 219  Q
    ||||||||||||||| |||||||||||||||||||    
T  45242341 ggtgccatttaatttgggaaaggagagttctttcc 45242307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 234
Target Start/End: Complemental strand, 49757230 - 49757181
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagtt 234  Q
    |||||| |||||||| |||||||||| || ||||||| ||||||||||||    
T  49757230 ggtgccgtttaatttgggaaaggagacttttttcctaccatgggaaagtt 49757181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 240
Target Start/End: Original strand, 41755498 - 41755554
Alignment:
Q  184 aggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcat 240  Q
    ||||| |||||||||| ||||||||||||| ||||| | |||| |||| ||||||||    
T  41755498 aggtgtcatttaatttgggaaaggagagttttttcccaccatgagaaaattgatcat 41755554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 184 - 247
Target Start/End: Original strand, 8204119 - 8204182
Alignment:
Q  184 aggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    |||||||||||||||| ||||||||||||||||||| | |||||||||||||||||| ||||||    
T  8204119 aggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtccatt 8204182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 15184065 - 15184003
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    ||||||||||||||| ||||||||||||||||||| | |||||||||||||||||| ||||||    
T  15184065 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtccatt 15184003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 184 - 247
Target Start/End: Complemental strand, 33002865 - 33002802
Alignment:
Q  184 aggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    ||||| |||||||||| ||||||||||||||||||| | |||||||||||||||||| ||||||    
T  33002865 aggtgtcatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtccatt 33002802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 12190209 - 12190144
Alignment:
Q  182 tcaggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    |||||||||||||||||| ||||| ||||||| ||||| | |||||||||||||||||| ||||||    
T  12190209 tcaggtgccatttaatttgggaaaagagagttttttcccaccatgggaaagttgatcatgtccatt 12190144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 33001929 - 33001994
Alignment:
Q  182 tcaggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    |||||| ||||||||||| ||||||||||||||||||| | ||||| |||||||||||| ||||||    
T  33001929 tcaggtaccatttaatttgggaaaggagagttctttcccaccatggaaaagttgatcatgtccatt 33001994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 184 - 240
Target Start/End: Complemental strand, 36626679 - 36626623
Alignment:
Q  184 aggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcat 240  Q
    |||||||||||||||| ||||| ||||||||||||| | ||||||||||||||||||    
T  36626679 aggtgccatttaatttgggaaatgagagttctttcccaccatgggaaagttgatcat 36626623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 247
Target Start/End: Original strand, 8040194 - 8040257
Alignment:
Q  184 aggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    |||||||||||||||| |||||||| |||||||||| | | |||||||||||||||| ||||||    
T  8040194 aggtgccatttaatttgggaaaggacagttctttcccatcgtgggaaagttgatcatgtccatt 8040257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 686417 - 686478
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    ||||||||||||||| ||||||||||||| ||||| | |||||||||||||||||| ||||||    
T  686417 ggtgccatttaatttgggaaaggagagtt-tttcccaccatgggaaagttgatcatgtccatt 686478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 232
Target Start/End: Original strand, 39950404 - 39950451
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcctaacatgggaaag 232  Q
    ||||||||||||||| ||||||||||||||||||| | ||||||||||    
T  39950404 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaag 39950451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 247
Target Start/End: Original strand, 15183079 - 15183151
Alignment:
Q  176 gtattatcaggtgccatttaatttaggaaaggagag-ttctttcctaacatgggaaagttgatcatatccatt 247  Q
    |||| ||| ||||||||||||||| ||||||||||| || ||||| | |||| ||||||||||||| ||||||    
T  15183079 gtataatcgggtgccatttaatttgggaaaggagagtttatttcccatcatgagaaagttgatcatgtccatt 15183151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 247
Target Start/End: Complemental strand, 8040493 - 8040430
Alignment:
Q  184 aggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    |||||||||||||||| |||||||| | |||||||| | | |||||||||| ||||| ||||||    
T  8040493 aggtgccatttaatttgggaaaggaaatttctttcccaccgtgggaaagttaatcatgtccatt 8040430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 219
Target Start/End: Complemental strand, 686701 - 686667
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcc 219  Q
    ||||||||||||||| |||||||||||||||||||    
T  686701 ggtgccatttaatttgggaaaggagagttctttcc 686667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 219
Target Start/End: Complemental strand, 39950480 - 39950446
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcc 219  Q
    ||||||||||||||| |||||||||||||||||||    
T  39950480 ggtgccatttaatttgggaaaggagagttctttcc 39950446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 247
Target Start/End: Complemental strand, 687395 - 687334
Alignment:
Q  186 gtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    |||||||||||||| ||||||||||||||||| | |  |||| ||||||||| || ||||||    
T  687395 gtgccatttaatttgggaaaggagagttcttttccactatggaaaagttgattatgtccatt 687334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 27221 - 27283
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    ||||||||||||||| ||||||||||||||||||| | |||||||||||||||||| ||||||    
T  27221 ggtgccatttaatttgggaaaggagagttctttcccatcatgggaaagttgatcatgtccatt 27283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 27623 - 27561
Alignment:
Q  185 ggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgatcatatccatt 247  Q
    ||||||||||||||| | ||||||||||| ||||| | |||||||||||||||||||||||||    
T  27623 ggtgccatttaatttggaaaaggagagttttttcccaccatgggaaagttgatcatatccatt 27561  T

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Target: scaffold0311 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 184 - 237
Target Start/End: Complemental strand, 209 - 156
Alignment:
Q  184 aggtgccatttaatttaggaaaggagagttctttcctaacatgggaaagttgat 237  Q
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T  209 aggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgat 156  T

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