View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8692_low_4 (Length: 249)
Name: NF8692_low_4
Description: NF8692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8692_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 32377005 - 32377240
Alignment:
| Q |
1 |
tccatgttccatccaaacacacaaaaagggcagaaaagtgagagatatgataatgatagatcattccaaatgtcaagtattcctccactccatttcggtc |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32377005 |
tccatgttccatccaaacgcacaaaaagggcagaaaagtgagagatatgataatgatagatcattccaaatgtcaagtattcctccactccatttcggtc |
32377104 |
T |
|
| Q |
101 |
tattttctataattcctccttgttgatctttagatacaaatgcgtattttttctcaaagggtttgtctctaacttgaacctgtgattcttcatctatctc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32377105 |
tattttctataattcctccttgttgatctttagatacaaatgcgtattttttctcgaagggtttgtctctaacttgaacctgtgattcttcatctatctc |
32377204 |
T |
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| Q |
201 |
acaatcatagtccttaccaagtggactaagaataat |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
32377205 |
acaatcatagtccttaccaagtggactaagaataat |
32377240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 32365320 - 32365553
Alignment:
| Q |
1 |
tccatgttccatccaaacacacaaaaagggcagaaaagtgagagatatgataatgatagatcattccaaatgtcaagtattcctccactccatttcggtc |
100 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32365320 |
tccatgttccatccaaacgcacaaaaagggcagaaaagtgagagatatgataatgatagatcattccaaatgtcaagtattcctccactccatttcggtc |
32365419 |
T |
|
| Q |
101 |
tattttctataattcctccttgttgatctttagatacaaatgcgtattttttctcaaagggtttgtctctaacttgaacctgtgattcttcatctatctc |
200 |
Q |
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| T |
32365420 |
tattttctataatacctccttgttgatctttagatgcaaatgcatattttttctcgaatggtttctctctaacttgaacctgtgattcttcatctatctc |
32365519 |
T |
|
| Q |
201 |
acaatcatagtccttaccaagtggactaagaata |
234 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
32365520 |
acaatcatagtccttaccaagtggactaagaata |
32365553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 36121938 - 36122044
Alignment:
| Q |
1 |
tccatgttccatccaaacacacaaaaagggcagaaaagtgagagatatgataatgatagatcattccaaatgtcaagtattcctccactccatttcggtc |
100 |
Q |
| |
|
||||| ||||| ||||| ||||||||| ||||||||||| | ||||| | || | ||| | |||||||||||||||||| |||||||| || |||| |
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| T |
36121938 |
tccatattccaaccaaatgcacaaaaagtacagaaaagtgataaatatgcttgagagatatcgtcccaaatgtcaagtattccaccactccactttggtc |
36122037 |
T |
|
| Q |
101 |
tattttc |
107 |
Q |
| |
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||||||| |
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|
| T |
36122038 |
tattttc |
36122044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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