View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8692_low_5 (Length: 244)
Name: NF8692_low_5
Description: NF8692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8692_low_5 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 61 - 244
Target Start/End: Original strand, 5442925 - 5443111
Alignment:
| Q |
61 |
acaaattcaaagactaatttgttataaggaaacattgaaagattaatatgttagaatcttttaacttatctgatcatataagatatttgacctatataat |
160 |
Q |
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| T |
5442925 |
acaaattcaaggactaatttattataaggaaacattgaaagattaatacgttacaatcttttaacttatatgatcacataagatatttgacctatataat |
5443024 |
T |
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| Q |
161 |
aataactttagg---cgtgcattttcttctttgatagtgaatgatgacaattaattcaaatctccaccaaacacaatataaaaaaca |
244 |
Q |
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| T |
5443025 |
aataacttggggtgttgtgcattttcttctttgatagtgaatgatgacaattaattcaaatctccaccaaacacaatataaaaaaca |
5443111 |
T |
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