View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8693_low_2 (Length: 406)
Name: NF8693_low_2
Description: NF8693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8693_low_2 |
 | |
|
| [»] scaffold0006 (1 HSPs) |
| | |
|
| [»] scaffold0068 (1 HSPs) |
| | |
|
| [»] scaffold0044 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 44 - 400
Target Start/End: Original strand, 13523342 - 13523697
Alignment:
| Q |
44 |
aacaaatgaacccaatccatagcagataaaagacctaaagcttctccaacatatacttcacacatagggctgaaacagtccgttctagccaacacaaagt |
143 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13523342 |
aacaaatgaacccaatccatagcagataaaagacctaaagcttctccaacatgtacttcacacatagggctgaaacagtccgttctagccaacacaaagt |
13523441 |
T |
|
| Q |
144 |
gaccgttctcatctctaatgcacatccctattccaaccagattcgccgtctcagaaaaagctgcgtcaatgttgcatttaagcctccctgaccttggttt |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13523442 |
gaccgttctcatctctaatgcacatccctattccaaccagattcgccgtctcggaaaa-gctgcgtcaatgttgcatttaagcctccctgaccttggttt |
13523540 |
T |
|
| Q |
244 |
tatccacttcacgttgctagctgggtattctcgtctgacagtacttccttgaatggaccttggtgcctttcaatcttctaatagtgatttggcacgatca |
343 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| | |
|
|
| T |
13523541 |
tatccacttcacgttgctagctgggtattctcgactgacagtacttccttgaatggaccttgctgccttccaatcttctaatagtgatttggcacgataa |
13523640 |
T |
|
| Q |
344 |
aaaacaaagtcttgcgtatcagttacttctttccaaatcttattgtttctctgcttc |
400 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13523641 |
aaaacaaagccttgcgtatcagttacttctttccaaatcttattgtttctctgcttc |
13523697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 44 - 400
Target Start/End: Original strand, 13612877 - 13613232
Alignment:
| Q |
44 |
aacaaatgaacccaatccatagcagataaaagacctaaagcttctccaacatatacttcacacatagggctgaaacagtccgttctagccaacacaaagt |
143 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13612877 |
aacaaatgaacccaatccatagcagataaaagacctaaagcttctccaacatgtacttcacacatagggctgaaacagtccgttctagccaacacaaagt |
13612976 |
T |
|
| Q |
144 |
gaccgttctcatctctaatgcacatccctattccaaccagattcgccgtctcagaaaaagctgcgtcaatgttgcatttaagcctccctgaccttggttt |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13612977 |
gaccgttctcatctctaatgcacatccctattccaaccagattcgccgtctcggaaaa-gctgcgtcaatgttgcatttaagcctccctgaccttggttt |
13613075 |
T |
|
| Q |
244 |
tatccacttcacgttgctagctgggtattctcgtctgacagtacttccttgaatggaccttggtgcctttcaatcttctaatagtgatttggcacgatca |
343 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| | |
|
|
| T |
13613076 |
tatccacttcacgttgctagctgggtattctcgactgacagtacttccttgaatggaccttgctgccttccaatcttctaatagtgatttggcacgataa |
13613175 |
T |
|
| Q |
344 |
aaaacaaagtcttgcgtatcagttacttctttccaaatcttattgtttctctgcttc |
400 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13613176 |
aaaacaaagccttgcgtatcagttacttctttccaaatcttattgtttctctgcttc |
13613232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 305; Significance: 1e-171; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 44 - 400
Target Start/End: Complemental strand, 24177576 - 24177220
Alignment:
| Q |
44 |
aacaaatgaacccaatccatagcagataaaagacctaaagcttctccaacatatacttcacacatagggctgaaacagtccgttctagccaacacaaagt |
143 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24177576 |
aacaaatgaacccaatccatagcagataaaagacctaaagcttctccaacatgtacttcacacatagggctgaaacagtccgttctagccaacacaaagt |
24177477 |
T |
|
| Q |
144 |
gaccgttctcatctctaatgcacatccctattccaaccagattcgccgtctcagaaaaagctgcgtcaatgttgcatttaagcctccctgaccttggttt |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| || ||||||| ||||||| |||||||||| |
|
|
| T |
24177476 |
gaccgttctcatctctaatgcacatccctactccaaccagattcgccgtctcggaaaaagctgcgtcaatattacatttaaacctccctaaccttggttt |
24177377 |
T |
|
| Q |
244 |
tatccacttcacgttgctagctgggtattctcgtctgacagtacttccttgaatggaccttggtgcctttcaatcttctaatagtgatttggcacgatca |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||| |||||||||||||||||| |
|
|
| T |
24177376 |
tatccacttcacgttgctagctgggtattctcgtctgacagtacttccttgaatggaccttgctgccttccagtcttctaacagtgatttggcacgatca |
24177277 |
T |
|
| Q |
344 |
aaaacaaagtcttgcgtatcagttacttctttccaaatcttattgtttctctgcttc |
400 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24177276 |
aaaacaaagccttgcgcatcagttacttctttccaaatcttattgtttctctgcttc |
24177220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 182
Target Start/End: Complemental strand, 32096977 - 32096860
Alignment:
| Q |
65 |
gcagataaaagacctaaagcttctccaacatatacttcacacatagggctgaaacagtccgttctagccaacacaaagtgaccgttctcatctctaatgc |
164 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||||||| |||||||| || || ||| | ||||| ||||| ||| | || ||||| || | |
|
|
| T |
32096977 |
gcagataaaaatcctaaagcttctccaacatgaacttcacacatggggctgaagcattctgttttggccaaaacaaaagtaccatgttcgtctcttatac |
32096878 |
T |
|
| Q |
165 |
acatccctattccaacca |
182 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
32096877 |
acatccctattccaacca |
32096860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 46 - 186
Target Start/End: Original strand, 5954189 - 5954329
Alignment:
| Q |
46 |
caaatgaacccaatccatagcagataaaagacctaaagcttctccaacatatacttcacacatagggctgaaacagtccgttctagccaacacaaagtga |
145 |
Q |
| |
|
||||||| |||| ||||||||||||||||| || || ||||||| || || |||||||| || |||||||| |||| |||||||| | ||||| || |
|
|
| T |
5954189 |
caaatgagcccagtccatagcagataaaagtcccaacgcttctctaatatggacttcacaaatggggctgaagtagtctgttctagcaagtacaaaatgt |
5954288 |
T |
|
| Q |
146 |
ccgttctcatctctaatgcacatccctattccaaccagatt |
186 |
Q |
| |
|
|| || ||||||||||| ||||| || || ||||| ||||| |
|
|
| T |
5954289 |
ccattttcatctctaatacacattccgatgccaactagatt |
5954329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 44 - 400
Target Start/End: Complemental strand, 22849392 - 22849038
Alignment:
| Q |
44 |
aacaaatgaacccaatccatagcagataaaagacctaaagcttctccaacatatacttcacacatagggctgaaacagtccgttctagccaacacaaagt |
143 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
22849392 |
aacaaatgaacccaatccatagcagataaaagacctaaagcttctccaacatgtacttcacacatagggctgaaacagtacgttctagccaacacaaagt |
22849293 |
T |
|
| Q |
144 |
gaccgttctcatctctaatgcacatccctattccaaccagattcgccgtctcagaaaaagctgcgtcaatgttgcatttaagcctccctgaccttggttt |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
22849292 |
gaccgttctcatctctaatgcacatccctattccaaccagattctccgtctcggaaaaagctgcgtcaatgttgcatttaaacctccctgaccttggttt |
22849193 |
T |
|
| Q |
244 |
tatccacttcacgttgctagctgggtattctcgtctgacagtacttccttgaatggaccttggtgcctttcaatcttctaatagtgatttggcacgatca |
343 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
22849192 |
tatccacttcacattgctagctgggtattctcgtctg--aatacttccttgaatggaccttgctgccttccaatcttctaatagtgatttggcacgatca |
22849095 |
T |
|
| Q |
344 |
aaaacaaagtcttgcgtatcagttacttctttccaaatcttattgtttctctgcttc |
400 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
22849094 |
aaaacaaagccttgcgtatcagttacttctttccaaatcttattatttctctgcttc |
22849038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 137 - 219
Target Start/End: Original strand, 33845976 - 33846058
Alignment:
| Q |
137 |
acaaagtgaccgttctcatctctaatgcacatccctattccaaccagattcgccgtctcagaaaaagctgcgtcaatgttgca |
219 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||| ||||||| ||| | ||||||||||||||| || ||||| ||||| |
|
|
| T |
33845976 |
acaaaatgaccgtcctcatctctaatgcacatccctatgccaaccaaattagtcgtctcagaaaaagccgcatcaatattgca |
33846058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 44 - 400
Target Start/End: Original strand, 203377 - 203733
Alignment:
| Q |
44 |
aacaaatgaacccaatccatagcagataaaagacctaaagcttctccaacatatacttcacacatagggctgaaacagtccgttctagccaacacaaagt |
143 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
203377 |
aacaaatgaacccaatccataacagataaaagacctaaagcttctccaacatgtacttcacacatagggctgaaacagtccgttctagctaacacaaagt |
203476 |
T |
|
| Q |
144 |
gaccgttctcatctctaatgcacatccctattccaaccagattcgccgtctcagaaaaagctgcgtcaatgttgcatttaagcctccctgaccttggttt |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||| ||||||| |||||||||| |
|
|
| T |
203477 |
gaccgttctcatctctaatgcacatccctattccaaccagattcgccgtctcggaaaaagctgcgtcaatattacatttaaacctccctaaccttggttt |
203576 |
T |
|
| Q |
244 |
tatccacttcacgttgctagctgggtattctcgtctgacagtacttccttgaatggaccttggtgcctttcaatcttctaatagtgatttggcacgatca |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||| | |
|
|
| T |
203577 |
tatccacttcacgttgctagctgggtattctcgtctgacagtacttccttgaatggaccttgctgccttccaatcttctaacagtgatttggcacgataa |
203676 |
T |
|
| Q |
344 |
aaaacaaagtcttgcgtatcagttacttctttccaaatcttattgtttctctgcttc |
400 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
203677 |
aaaacaaagccttgcgcatcagttacttctttccaaatcttattgtttctctgcttc |
203733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 44 - 400
Target Start/End: Complemental strand, 21504881 - 21504525
Alignment:
| Q |
44 |
aacaaatgaacccaatccatagcagataaaagacctaaagcttctccaacatatacttcacacatagggctgaaacagtccgttctagccaacacaaagt |
143 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||| |||||||||||| |
|
|
| T |
21504881 |
aacaaatgaacccaatccagagaagataaaagacctaaagcttctccaacatgtacttcacacatagggttgaaacagtctgttctacccaacacaaagt |
21504782 |
T |
|
| Q |
144 |
gaccgttctcatctctaatgcacatccctattccaaccagattcgccgtctcagaaaaagctgcgtcaatgttgcatttaagcctccctgaccttggttt |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||| |||||||| |
|
|
| T |
21504781 |
gaccgttctcatctctaatgcacatccctattccaaccagattcgccgtctcggaaaaagctgcgtcaatgttgcatttaaacctccttgatcttggttt |
21504682 |
T |
|
| Q |
244 |
tatccacttcacgttgctagctgggtattctcgtctgacagtacttccttgaatggaccttggtgcctttcaatcttctaatagtgatttggcacgatca |
343 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
21504681 |
tattcacttcacgttgctagctgggtattctcgtctgacagtacttccttgaatggaccttgctgccttccaatcttctaatagtgatttggcacgatca |
21504582 |
T |
|
| Q |
344 |
aaaacaaagtcttgcgtatcagttacttctttccaaatcttattgtttctctgcttc |
400 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21504581 |
aaaacaaagccttgcgtatcagttacttctttccaaatcttattgtttctctgcttc |
21504525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 44 - 400
Target Start/End: Complemental strand, 13503186 - 13502830
Alignment:
| Q |
44 |
aacaaatgaacccaatccatagcagataaaagacctaaagcttctccaacatatacttcacacatagggctgaaacagtccgttctagccaacacaaagt |
143 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13503186 |
aacaaatgaacccaatccatagcagataaaagacctaaagcttctccaacatgtacttcacacatagggctgaaacagtccgttctagccaacacaaagt |
13503087 |
T |
|
| Q |
144 |
gaccgttctcatctctaatgcacatccctattccaaccagattcgccgtctcagaaaaagctgcgtcaatgttgcatttaagcctccctgaccttggttt |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||| || ||||||| ||||||| |||||||||| |
|
|
| T |
13503086 |
gaccgttctcatctctaatgcacatccctactccaaccagattcgccgtcttggaaaaatctgcgtcaatattacatttaaacctccctaaccttggttt |
13502987 |
T |
|
| Q |
244 |
tatccacttcacgttgctagctgggtattctcgtctgacagtacttccttgaatggaccttggtgcctttcaatcttctaatagtgatttggcacgatca |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||| |||||||||||||||||| |
|
|
| T |
13502986 |
tatccacttcacgttgctagctgggtattctcgtctgacagtacttccttgaatggaccttgctgccttccagtcttctaacagtgatttggcacgatca |
13502887 |
T |
|
| Q |
344 |
aaaacaaagtcttgcgtatcagttacttctttccaaatcttattgtttctctgcttc |
400 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13502886 |
aaaacaaagccttgcgcatcagttacttctttccaaatcttattgtttctctgcttc |
13502830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 44 - 401
Target Start/End: Complemental strand, 54781718 - 54781369
Alignment:
| Q |
44 |
aacaaatgaacccaatccatagcagataaaagacctaaagcttctccaacatatacttcacacatagggctgaaacagtccgttctagccaacacaaagt |
143 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54781718 |
aacaaatgaacccaatccatagcagataaaaggcctaaagcttctccaacatgtaattcacacatagggctgaaacagtccgttctagccaacacaaagt |
54781619 |
T |
|
| Q |
144 |
gaccgttctcatctctaatgcacatccctattccaaccagattcgccgtctcagaaaaagctgcgtcaatgttgcatttaagcctccctgaccttggttt |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||| |||||||| |
|
|
| T |
54781618 |
gaccgttctcatctctaatgcacatccctatgccaaccagattcaccgtctcagaaaaagctgcgtcaatgttacatttaaacctccctggtcttggttt |
54781519 |
T |
|
| Q |
244 |
tatccacttcacgttgctagctgggtattctcgtctgacagtacttccttgaatggaccttggtgcctttcaatcttctaatagtgatttggcacgatca |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
54781518 |
tatccacttcacgttgctagctgggtattctc--------gtacttccttgaatggaccttgtcgccttccaatcttctaaaagtgatttggcacgatca |
54781427 |
T |
|
| Q |
344 |
aaaacaaagtcttgcgtatcagttacttctttccaaatcttattgtttctctgcttct |
401 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54781426 |
aaaacaaagccttgcgcatcagttacttctttccaaatcttattgtttctctgcttct |
54781369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 46 - 219
Target Start/End: Complemental strand, 48213366 - 48213193
Alignment:
| Q |
46 |
caaatgaacccaatccatagcagataaaagacctaaagcttctccaacatatacttcacacatagggctgaaacagtccgttctagccaacacaaagtga |
145 |
Q |
| |
|
|||||| |||||||||| | ||||||| ||||| | |||||||| | || |||||||| |||| ||||| | |||||| |||| | ||||| ||| |
|
|
| T |
48213366 |
caaatgcacccaatccacaacagataacagaccaagcgcttctcctatatggacttcacaagtaggactgaagtaatccgttttagcaagtacaaaatga |
48213267 |
T |
|
| Q |
146 |
ccgttctcatctctaatgcacatccctattccaaccagattcgccgtctcagaaaaagctgcgtcaatgttgca |
219 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||| ||| ||||||||||||||||| || ||||| ||||| |
|
|
| T |
48213266 |
ccgtcctcatctctaatgcacatccctatgccaaccaaattagccgtctcagaaaaagccgcatcaatattgca |
48213193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 154 - 219
Target Start/End: Original strand, 46388202 - 46388267
Alignment:
| Q |
154 |
atctctaatgcacatccctattccaaccagattcgccgtctcagaaaaagctgcgtcaatgttgca |
219 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||| ||| ||||| ||||||| || ||||| ||||| |
|
|
| T |
46388202 |
atctctaatgcacatccctatgccaaccaaattagccatctcaaaaaaagccgcatcaatattgca |
46388267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0068 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0068
Description:
Target: scaffold0068; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 46 - 219
Target Start/End: Original strand, 5560 - 5733
Alignment:
| Q |
46 |
caaatgaacccaatccatagcagataaaagacctaaagcttctccaacatatacttcacacatagggctgaaacagtccgttctagccaacacaaagtga |
145 |
Q |
| |
|
|||||| ||||||||||||||||| || ||||| | ||||||| | || |||||||| |||| ||||| | || ||| |||| || ||||| ||| |
|
|
| T |
5560 |
caaatgcacccaatccatagcagagaacagaccaagcacttctcctatatggacttcacaagtaggactgaagtaatctgttttagcaaatacaaaatga |
5659 |
T |
|
| Q |
146 |
ccgttctcatctctaatgcacatccctattccaaccagattcgccgtctcagaaaaagctgcgtcaatgttgca |
219 |
Q |
| |
|
|| | |||||||||||||||||||||||| ||||||| ||| ||||||||||||||||| || ||||| ||||| |
|
|
| T |
5660 |
ccatcctcatctctaatgcacatccctatgccaaccaaattagccgtctcagaaaaagccgcatcaatattgca |
5733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 46 - 219
Target Start/End: Complemental strand, 21708350 - 21708177
Alignment:
| Q |
46 |
caaatgaacccaatccatagcagataaaagacctaaagcttctccaacatatacttcacacatagggctgaaacagtccgttctagccaacacaaagtga |
145 |
Q |
| |
|
|||||| ||||||||||||||||| || ||||| | ||||||| | || |||||||| |||| ||||| | || ||| |||| || ||||| ||| |
|
|
| T |
21708350 |
caaatgcacccaatccatagcagagaacagaccaagcacttctcctatatggacttcacaagtaggactgaagtaatctgttttagcaaatacaaaatga |
21708251 |
T |
|
| Q |
146 |
ccgttctcatctctaatgcacatccctattccaaccagattcgccgtctcagaaaaagctgcgtcaatgttgca |
219 |
Q |
| |
|
|| | |||||||||||||||||||||||| ||||||| ||| ||||||||||||||||| || ||||| ||||| |
|
|
| T |
21708250 |
ccatcctcatctctaatgcacatccctatgccaaccaaattagccgtctcagaaaaagccgcatcaatattgca |
21708177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0044 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0044
Description:
Target: scaffold0044; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 174
Target Start/End: Complemental strand, 10805 - 10768
Alignment:
| Q |
137 |
acaaagtgaccgttctcatctctaatgcacatccctat |
174 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
10805 |
acaaaatgaccgtcctcatctctaatgcacatccctat |
10768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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