View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8693_low_5 (Length: 267)
Name: NF8693_low_5
Description: NF8693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8693_low_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 13522579 - 13522337
Alignment:
| Q |
1 |
aaaggcttaacaattttatttattccacagaatgctaattttttgtttgacaaaaacagaatgctatacatttatcaaccctttaagcttattatatgtt |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
13522579 |
aaaggcataacaattttatttattccacagaatgctaattttttgtttgacaaaaacagaatgctaaacatttatcaaccctttaagcttattatatgtt |
13522480 |
T |
|
| Q |
101 |
tacacccgttttaaactgcaacttatatttttatttaaatttgtgaagctggctatatttaatgtttttattgattgagcaagaatttttagttgaggtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13522479 |
tacacccgttttaaactgcaacttatatttttatttaaatttgtgaagctggctatatttaatgtttttattgattgagcaagaatttttagttgaggtt |
13522380 |
T |
|
| Q |
201 |
caactaatgtcatcgagtgtgattcccttttgattaacgatga |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
13522379 |
caactaatgtcatcgagtgtgattcccttttgattaacaatga |
13522337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 13612114 - 13611872
Alignment:
| Q |
1 |
aaaggcttaacaattttatttattccacagaatgctaattttttgtttgacaaaaacagaatgctatacatttatcaaccctttaagcttattatatgtt |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
13612114 |
aaaggcataacaattttatttattccacagaatgctaattttttgtttgacaaaaacagaatgctaaacatttatcaaccctttaagcttattatatgtt |
13612015 |
T |
|
| Q |
101 |
tacacccgttttaaactgcaacttatatttttatttaaatttgtgaagctggctatatttaatgtttttattgattgagcaagaatttttagttgaggtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13612014 |
tacacccgttttaaactgcaacttatatttttatttaaatttgtgaagctggctatatttaatgtttttattgattgagcaagaatttttagttgaggtt |
13611915 |
T |
|
| Q |
201 |
caactaatgtcatcgagtgtgattcccttttgattaacgatga |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
13611914 |
caactaatgtcatcgagtgtgattcccttttgattaacaatga |
13611872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University