View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8693_low_7 (Length: 210)
Name: NF8693_low_7
Description: NF8693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8693_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 149; Significance: 7e-79; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 35 - 191
Target Start/End: Complemental strand, 36421601 - 36421445
Alignment:
| Q |
35 |
taatattgaaatttgaaagaaagttcacatgttcaagccattatcataatccttaagaagaaaatcctttcttcaaagtttgaacagttgcaacatcagt |
134 |
Q |
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| T |
36421601 |
taatattgaaatttgaaagaaagttcacatgttcaagccattatcataatccttaagaagaaaatcctttcttcaaagtttgaacggttgcaacatcagt |
36421502 |
T |
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| Q |
135 |
cttgaaagccaaagccaagacattgtcatcaatggtagagttaaacaatgtgctagc |
191 |
Q |
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| T |
36421501 |
cttgaaagccagagccaagacattgtcatcaatggtagagttaaacaatgtgctagc |
36421445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 47 - 191
Target Start/End: Complemental strand, 36425113 - 36424969
Alignment:
| Q |
47 |
ttgaaagaaagttcacatgttcaagccattatcataatccttaagaagaaaatcctttcttcaaagtttgaacagttgcaacatcagtcttgaaagccaa |
146 |
Q |
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|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
36425113 |
ttgatagaaagttcacatgttcaagccattatcgtaatccttaagaagaaaatcctttcttcaaagtttgaacggttgcaacatcagtcttgaaagccag |
36425014 |
T |
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| Q |
147 |
agccaagacattgtcatcaatggtagagttaaacaatgtgctagc |
191 |
Q |
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| T |
36425013 |
agccaagacattgtcatcaatggtagagttaaacaatgtgctagc |
36424969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 47 - 191
Target Start/End: Complemental strand, 36428086 - 36427942
Alignment:
| Q |
47 |
ttgaaagaaagttcacatgttcaagccattatcataatccttaagaagaaaatcctttcttcaaagtttgaacagttgcaacatcagtcttgaaagccaa |
146 |
Q |
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| T |
36428086 |
ttgaaagaaagttcacatgttcaagccattatcataatccttaagaagaaaatcctttcttcaacgtctgaactgttgcaacatcagtcttgaaagccaa |
36427987 |
T |
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| Q |
147 |
agccaagacattgtcatcaatggtagagttaaacaatgtgctagc |
191 |
Q |
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| T |
36427986 |
agccaagacattgtcatcaatggtagaattaaacaatgtgctagc |
36427942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 80 - 171
Target Start/End: Complemental strand, 36430605 - 36430513
Alignment:
| Q |
80 |
ataatccttaagaagaaaatcctttcttcaaa-gtttgaacagttgcaacatcagtcttgaaagccaaagccaagacattgtcatcaatggta |
171 |
Q |
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||||||||||||||| |||||||||||||||| ||| |||||| | |||||||||||||||| ||||||||||| || |||| | ||||||| |
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| T |
36430605 |
ataatccttaagaagcaaatcctttcttcaaattttttaacagtggtaacatcagtcttgaaacccaaagccaagccactgtcgttaatggta |
36430513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 88 - 167
Target Start/End: Original strand, 19144266 - 19144345
Alignment:
| Q |
88 |
taagaagaaaatcctttcttcaaagtttgaacagttgcaacatcagtcttgaaagccaaagccaagacattgtcatcaat |
167 |
Q |
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||||||| ||| |||||||||||| |||| | || | ||||||||||||||||||||||||||||||| | |||||||| |
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| T |
19144266 |
taagaagtaaaacctttcttcaaattttggatggtggtaacatcagtcttgaaagccaaagccaagacagtatcatcaat |
19144345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 88 - 167
Target Start/End: Complemental strand, 19148727 - 19148648
Alignment:
| Q |
88 |
taagaagaaaatcctttcttcaaagtttgaacagttgcaacatcagtcttgaaagccaaagccaagacattgtcatcaat |
167 |
Q |
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||||||| ||| |||||||||||| |||| | || | ||||||||||||||||||||||||||||||| | |||||||| |
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| T |
19148727 |
taagaagtaaaacctttcttcaaattttggatggtggtaacatcagtcttgaaagccaaagccaagacagtatcatcaat |
19148648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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