View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8694_low_2 (Length: 458)
Name: NF8694_low_2
Description: NF8694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8694_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 8 - 443
Target Start/End: Original strand, 10026542 - 10026980
Alignment:
| Q |
8 |
attatactattatgattagcactagaattcttattttgtcatttctctcaattcatcgctcatgtctctcatctgtatatcttcctcttcctccatatat |
107 |
Q |
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||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||| | |||||||||||| |||| ||| |||||||||||| | || |
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| T |
10026542 |
attatcctattatgattagcactagaattcttattttgccctttctctcaattcatcgatgatgtctctcatccgtatctctacctcttcctccacaaat |
10026641 |
T |
|
| Q |
108 |
cttcagcacc---tcttctatatgttatggatctgaccatatccttcactgtttccgttcttacaaccattgtgcaaaactacgtgccgcggttcacgtc |
204 |
Q |
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|||||||||| |||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
10026642 |
cttcagcaccatctcttctatctgttatggatctgacaatatccttcactgcttccgttcttacaaccattgtgcaaaactacgtgccaccgttcacgtc |
10026741 |
T |
|
| Q |
205 |
tccgtttcgtgattttatttcttctacacgacatgtttaagaattgggggataaaatatataattaattataaggaagaagaaggttaacgaatggattt |
304 |
Q |
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| T |
10026742 |
tccgtttcgtgattttatttcttctacactacatgtttaagaattggggtttaaaatatattattaattataaggaagaagaaggttaacgaatggattt |
10026841 |
T |
|
| Q |
305 |
tatttcttctacaccaatttcgtgattttaaccataatcaaaatccgtttatttcaacaataacaaacttatttcaaccttgactatggaagaagaagaa |
404 |
Q |
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| T |
10026842 |
tatttcttccacaccaattttgagattttaaccataatcaaaatccgtttatttcaaccataacaaacttatttcaaccttgactatggaagaagaagaa |
10026941 |
T |
|
| Q |
405 |
ggttaacaaagagatttcagctaccgtggttttatttct |
443 |
Q |
| |
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| T |
10026942 |
ggttaacaaacggatttcagctaccgtgattttatttct |
10026980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 45980467 - 45980403
Alignment:
| Q |
8 |
attatactattatgattagcactagaattcttattttgtcatttctctcaattcatcgctcatgt |
72 |
Q |
| |
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||||| |||| ||||||||||||| |||||||| |||| | | ||| |||||||||||||||||| |
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| T |
45980467 |
attatcctatcatgattagcactaaaattcttaatttgccctctctttcaattcatcgctcatgt |
45980403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 8 - 443
Target Start/End: Original strand, 7547962 - 7548398
Alignment:
| Q |
8 |
attatactattatgattagcactagaattcttattttgtcatttctctcaattcatcgctcatgtctctcatctgt--atatcttcctcttcctccatat |
105 |
Q |
| |
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||||| |||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||| | || ||| |||||| ||||||| |
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| T |
7547962 |
attatcctattatgattagcactagaattcg-attttgccctttctctcaattcatcgctcatgtctctcattcatcaatctctacctctttctccataa |
7548060 |
T |
|
| Q |
106 |
atcttcagcacc---tcttctatatgttatggatctgaccatatccttcactgtttccgttcttacaaccattgtgcaaaactacgtgccgcggttcacg |
202 |
Q |
| |
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|||||||||||| |||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
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| T |
7548061 |
atcttcagcaccatctcttctatctgttatggatctgaccatttccttcactgccatcgttcttacaaccattgtgcaaaactacgtgccgttgttcacg |
7548160 |
T |
|
| Q |
203 |
tctccgtttcgtgattttatttcttctacacgacatgtttaagaattgggggataaaatatataattaattataaggaagaagaaggttaacgaatggat |
302 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
7548161 |
tctccatttcgtgattttatttcttctacacgacatgtttaagaatttggggttaaaatatataattaattaaaaggaagaagaaggttaacaaatggat |
7548260 |
T |
|
| Q |
303 |
tttatttcttctacaccaatttcgtgattttaaccataatcaaaatccgtttatttcaacaataacaaacttatttcaaccttgactatggaagaagaag |
402 |
Q |
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||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
7548261 |
tttat---ttctacactaatttcgtgattttaaccataatcaaaatccgtttatttcaaccataacaaacttatttcaaccttgactatggaagaagaag |
7548357 |
T |
|
| Q |
403 |
aaggttaacaaagagatttcagctaccgtggttttatttct |
443 |
Q |
| |
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||||||||| || ||||||||| | |||| |||||||||| |
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| T |
7548358 |
aaggttaaccaacggatttcagccatcgtgattttatttct |
7548398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 177; Significance: 3e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 189 - 443
Target Start/End: Complemental strand, 16567569 - 16567318
Alignment:
| Q |
189 |
tgccgcggttcacgtctccgtttcgtgattttatttcttctacacgacatgtttaagaattgggggataaaatatataattaattataaggaagaagaag |
288 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
16567569 |
tgccgccgttcacgtctccgttttgtgattttatttcttttacacgacatgtttaagaattgggggttaaaatatataattaattataaggaagaagaag |
16567470 |
T |
|
| Q |
289 |
gttaacgaatggattttatttcttctacaccaatttcgtgattttaaccataatcaaaatccgtttatttcaacaataacaaacttatttcaaccttgac |
388 |
Q |
| |
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|| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
16567469 |
attgacaaatggattttatttcttctacaccaatttcatgattttaaccataatcaaaatctgtttatttcaaccataacaaacttatttcaaccttgac |
16567370 |
T |
|
| Q |
389 |
tatggaagaagaagaaggttaacaaagagatttcagctaccgtggttttatttct |
443 |
Q |
| |
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|||||||||| ||||||||||||| ||||||||| | ||| |||||||||| |
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| T |
16567369 |
tatggaagaa---gaaggttaacaaatggatttcagccatcgtaattttatttct |
16567318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 8 - 155
Target Start/End: Complemental strand, 16567720 - 16567568
Alignment:
| Q |
8 |
attatactattatgattagcactagaattcttattttgtcatttctctcaattcatcgctcatgtctctcatc--tgtatatcttcctcttcctccatat |
105 |
Q |
| |
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||||| ||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||| | || ||| |||||||||||||| |
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| T |
16567720 |
attatcctattatgattagcaatagaattcttattttaccctttctctcaattcatcgctcatgtctctcatccatcgatctctacctcttcctccataa |
16567621 |
T |
|
| Q |
106 |
atcttcagcac---ctcttctatatgttatggatctgaccatatccttcactg |
155 |
Q |
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||||||||||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
16567620 |
atcttcagcaccatctcttctatatgttatggatctgaccatttccttcactg |
16567568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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