View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8694_low_4 (Length: 279)

Name: NF8694_low_4
Description: NF8694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8694_low_4
NF8694_low_4
[»] chr6 (7 HSPs)
chr6 (17-263)||(6954712-6954958)
chr6 (19-261)||(6948075-6948317)
chr6 (19-261)||(6921545-6921790)
chr6 (163-261)||(6943149-6943247)
chr6 (163-261)||(6935413-6935511)
chr6 (69-130)||(6935532-6935593)
chr6 (69-134)||(6943264-6943329)
[»] chr7 (6 HSPs)
chr7 (20-261)||(1986150-1986394)
chr7 (17-261)||(15572105-15572352)
chr7 (79-220)||(13417153-13417294)
chr7 (67-105)||(19351408-19351446)
chr7 (78-107)||(9807519-9807548)
chr7 (78-119)||(29859125-29859166)
[»] chr1 (1 HSPs)
chr1 (69-119)||(39379419-39379469)


Alignment Details
Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 17 - 263
Target Start/End: Complemental strand, 6954958 - 6954712
Alignment:
Q  17 tggtgttgttatgtttgaaaagggatggtgagcttattgcaaccacggttaaagtttttactttgggtgataatgtttggagagatattgattgtttccc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6954958 tggtgttgttatgtttgaaaagggatggtgagcttattgcaaccacggttaaagtttttactttgggtgataatgtttggagagatattgattgtttccc 6954859  T
Q  117 ggtggaattggtgtatcatcgttctttaatgtttgcgagagataaagtttatttgaataatagtattaattgggttgtccgtcaccgatattattgtcat 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6954858 ggtggaattggtgtatcatcgttctttaatgtttgcgagagataaagtttatttgaataatagtattaattgggttgtccgtcaccgatattattgtcat 6954759  T
Q  217 ttgaagaatcttacagttgaaaaatttgtgatcatctcacttgatat 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  6954758 ttgaagaatcttacagttgaaaaatttgtgatcatctcacttgatat 6954712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 19 - 261
Target Start/End: Complemental strand, 6948317 - 6948075
Alignment:
Q  19 gtgttgttatgtttgaaaagggatggtgagcttattgcaaccacggttaaagtttttactttgggtgataatgtttggagagatattgattgtttcccgg 118  Q
    |||||||||||| |||||| |||||| || |||| | ||||| |||||||| ||||||||||||||||||||| ||||||||| ||||||||||| || |    
T  6948317 gtgttgttatgtatgaaaatggatggcgaacttaatacaaccgcggttaaactttttactttgggtgataatgattggagagaaattgattgtttgcctg 6948218  T
Q  119 tggaattggtgtatcatcgttctttaatgtttgcgagagataaagtttatttgaataatagtattaattgggttgtccgtcaccgatattattgtcattt 218  Q
    ||| | |||||  ||||| || |   | || || ||||||    ||||||||||||| |||||||| ||||  ||| |||||||||||||||||||||||    
T  6948217 tggtagtggtgagtcatccttttggtaagtatgtgagagacggtgtttatttgaatagtagtattagttggtgtgttcgtcaccgatattattgtcattt 6948118  T
Q  219 gaagaatcttacagttgaaaaatttgtgatcatctcacttgat 261  Q
    |||||||||||  |||||| || ||||||| ||||||||||||    
T  6948117 gaagaatcttatggttgaacaacttgtgatgatctcacttgat 6948075  T

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Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 261
Target Start/End: Complemental strand, 6921790 - 6921545
Alignment:
Q  19 gtgttgttatgtttgaaaagggatggt---gagcttattgcaaccacggttaaagtttttactttgggtgataatgtttggagagatattgattgtttcc 115  Q
    ||||| ||||||||||||||||||| |   || |||||||||||  | || | ||||||||||||||||||||||| ||||||||| ||||||||||| |    
T  6921790 gtgttcttatgtttgaaaagggatgatagcgaccttattgcaacggccgtaagagtttttactttgggtgataatgattggagagacattgattgtttgc 6921691  T
Q  116 cggtggaattggtgtatcatcgttctttaatgtttgcgagagataaagtttatttgaataatagtattaattgggttgtccgtcaccgatattattgtca 215  Q
    | |||| |||||||  ||||| || |   | || || | || ||   ||||||||||| | |||| ||| ||||  ||| |||  | |||||||||||||    
T  6921690 ctgtggtattggtgcgtcatccttttggtaagtatgtgcgaaatggcgtttatttgaaaagtagtgttagttggtgtgttcgttgcagatattattgtca 6921591  T
Q  216 tttgaagaatcttacagttgaaaaatttgtgatcatctcacttgat 261  Q
    |||||| |||||||  |||||| |||||||||| ||||||||||||    
T  6921590 tttgaaaaatcttattgttgaacaatttgtgatgatctcacttgat 6921545  T

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Target: chr6; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 163 - 261
Target Start/End: Complemental strand, 6943247 - 6943149
Alignment:
Q  163 gtttatttgaataatagtattaattgggttgtccgtcaccgatattattgtcatttgaagaatcttacagttgaaaaatttgtgatcatctcacttgat 261  Q
    ||||||||||| | |||||||| ||||  ||| |||||||||||| ||||||||||||||||||||||||||||| |||| ||||| ||||||||||||    
T  6943247 gtttatttgaaaagtagtattagttggtgtgttcgtcaccgatataattgtcatttgaagaatcttacagttgaacaattcgtgatgatctcacttgat 6943149  T

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Target: chr6; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 163 - 261
Target Start/End: Complemental strand, 6935511 - 6935413
Alignment:
Q  163 gtttatttgaataatagtattaattgggttgtccgtcaccgatattattgtcatttgaagaatcttacagttgaaaaatttgtgatcatctcacttgat 261  Q
    ||||||||||| | |||||||| ||||  ||| ||| |||||||| ||||||||||||||||||||||||| ||| |||| ||||| ||||||||||||    
T  6935511 gtttatttgaaaagtagtattagttggtgtgttcgttaccgatataattgtcatttgaagaatcttacagtcgaacaattcgtgatgatctcacttgat 6935413  T

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Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 130
Target Start/End: Complemental strand, 6935593 - 6935532
Alignment:
Q  69 agtttttactttgggtgataatgtttggagagatattgattgtttcccggtggaattggtgt 130  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||| |  |||| ||||||||    
T  6935593 agtttttactttgggtgataatgattggagagacattgattgtttgcaagtggcattggtgt 6935532  T

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Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 134
Target Start/End: Complemental strand, 6943329 - 6943264
Alignment:
Q  69 agtttttactttgggtgataatgtttggagagatattgattgtttcccggtggaattggtgtatca 134  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||| |  |||| |||||||| |||    
T  6943329 agtttttactttgggtgataatgattggagagacattgattgtttgcatgtggcattggtgtgtca 6943264  T

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Target: chr7 (Bit Score: 89; Significance: 6e-43; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 20 - 261
Target Start/End: Complemental strand, 1986394 - 1986150
Alignment:
Q  20 tgttgttatgtttgaaaagggatggtgagcttattgcaaccacggttaaagtttttactttgggtgataatgtttggagagatattgattgtttcccggt 119  Q
    ||||||||||||||||||||||||||||||| ||| ||||| | || | |||||||||||||||| |||||| ||||||||| ||||||||||| || ||    
T  1986394 tgttgttatgtttgaaaagggatggtgagctgattacaaccgccgtaagagtttttactttgggttataatgattggagagaaattgattgtttgcctgt 1986295  T
Q  120 ggaattggtgtatcatcgttct----ttaatgtttgcgagagataaagtttatttgaataatagtattaattgggttgtccgtcaccgatattattgtca 215  Q
    || | |||||| ||||| || |     ||| || || |||| ||   ||||||||||||| |||||||| ||||  ||| |||||||||||| |||||||    
T  1986294 ggtagtggtgtgtcatccttttggtggtaa-gtatgtgagaaatggtgtttatttgaatagtagtattagttggtgtgttcgtcaccgatataattgtca 1986196  T
Q  216 tttgaagaatcttacagttgaaaaatttgtgatcatctcacttgat 261  Q
    |||||||||||||||||||||| || |||| || ||||||||||||    
T  1986195 tttgaagaatcttacagttgaacaacttgtaattatctcacttgat 1986150  T

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Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 261
Target Start/End: Complemental strand, 15572352 - 15572105
Alignment:
Q  17 tggtgttgttatgtttgaaaagggatggtg---agcttattgcaaccacggttaaagtttttactttgggtgataatgtttggagagatattgattgttt 113  Q
    ||||||||||||||| ||||||||||||||   |  ||||| || ||  ||| | ||| ||||||||||||||||| |||||||||||||||||||||||    
T  15572352 tggtgttgttatgttggaaaagggatggtggcgacgttattacatccgtggtaagagtatttactttgggtgataacgtttggagagatattgattgttt 15572253  T
Q  114 cccggtggaattggtgtatcatcgttctttaatgtttgc-gagagataaagtttatttgaataatagtattaattgggttgtccgtcaccgatattattg 212  Q
     || | || ||   || ||||| | |  |   | ||||| ||| |||  |||||||||||| ||||||| ||||||| ||| |||||| |||||||||||    
T  15572252 tcctggggtatccttgcatcatagcttgtctttttttgctgag-gatggagtttatttgaacaatagtactaattggtttgcccgtcaacgatattattg 15572154  T
Q  213 tcatttgaagaatcttacagttgaaaaatttgtgatcatctcacttgat 261  Q
    ||||||||||||||||||  ||||| |||||||||| ||||| ||||||    
T  15572153 tcatttgaagaatcttacgattgaacaatttgtgataatctcgcttgat 15572105  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 79 - 220
Target Start/End: Complemental strand, 13417294 - 13417153
Alignment:
Q  79 ttgggtgataatgtttggagagatattgattgtttcccggtggaattggtgtatcatcgttctttaatgtttgcgagagataaagtttatttgaataata 178  Q
    |||||||| |||||||||||| ||||||||| |||||| ||| ||||||||||||||| ||| |   | | | | || ||    |||||||| |||||||    
T  13417294 ttgggtgaaaatgtttggagaaatattgattatttccctgtgcaattggtgtatcatccttcatgtttttctacaagtgagggtgtttatttcaataata 13417195  T
Q  179 gtattaattgggttgtccgtcaccgatattattgtcatttga 220  Q
    ||||||||||| ||| ||||||||||||| ||||||||||||    
T  13417194 gtattaattggtttgcccgtcaccgatataattgtcatttga 13417153  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 105
Target Start/End: Complemental strand, 19351446 - 19351408
Alignment:
Q  67 aaagtttttactttgggtgataatgtttggagagatatt 105  Q
    |||||||||| |||| |||||||||||||||||||||||    
T  19351446 aaagtttttagtttgagtgataatgtttggagagatatt 19351408  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 107
Target Start/End: Original strand, 9807519 - 9807548
Alignment:
Q  78 tttgggtgataatgtttggagagatattga 107  Q
    ||||||||||||||||||||||||||||||    
T  9807519 tttgggtgataatgtttggagagatattga 9807548  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 119
Target Start/End: Original strand, 29859125 - 29859166
Alignment:
Q  78 tttgggtgataatgtttggagagatattgattgtttcccggt 119  Q
    |||||||||||| |||||||||||||||||  ||||||||||    
T  29859125 tttgggtgataacgtttggagagatattgaaagtttcccggt 29859166  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 39379469 - 39379419
Alignment:
Q  69 agtttttactttgggtgataatgtttggagagatattgattgtttcccggt 119  Q
    |||||| | |||||||||||||||||||||| |||||||  ||||||||||    
T  39379469 agttttcagtttgggtgataatgtttggagaaatattgaaagtttcccggt 39379419  T

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