View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8694_low_5 (Length: 252)
Name: NF8694_low_5
Description: NF8694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8694_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 4736647 - 4736708
Alignment:
| Q |
1 |
gacccgtgtgattcgtcctagctaaattctacccacaacgatcatattttgtgccctaaaaa |
62 |
Q |
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| T |
4736647 |
gacccgtgtgattcgtcctagctaaattctacccacaacgatcatattttgtgccctaaaaa |
4736708 |
T |
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Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 168 - 237
Target Start/End: Original strand, 4738644 - 4738713
Alignment:
| Q |
168 |
tttttataaattaatttccactagtattttgagcaaaattatttgtatcttcagagtgtaacttgtaact |
237 |
Q |
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| T |
4738644 |
tttttataaattaatttccactaatattttgagcaaaattatttgtatcttaagagtgtaacttgtaact |
4738713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 82
Target Start/End: Original strand, 4738475 - 4738503
Alignment:
| Q |
54 |
ccctaaaaaggtcatttgtcaagaactat |
82 |
Q |
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| T |
4738475 |
ccctaaaaaggtcatttgtcaagaactat |
4738503 |
T |
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