View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8694_low_7 (Length: 228)
Name: NF8694_low_7
Description: NF8694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8694_low_7 |
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| [»] scaffold0429 (1 HSPs) |
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| [»] scaffold0014 (2 HSPs) |
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Alignment Details
Target: scaffold0429 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: scaffold0429
Description:
Target: scaffold0429; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 5126 - 4917
Alignment:
| Q |
1 |
acatgatcgttaacatgaaaatcatttgatttaggaataaatgggtgcagagagtgagagaaagaagccctaatcatcgaagatgagtgtgattgaaatg |
100 |
Q |
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| T |
5126 |
acatgatcgttaacatgaaaatcatttgatttaggaataaatgggtgcagagagtgagagaaagaagccctaatcatcgaagatgagtgtgattgaaatg |
5027 |
T |
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| Q |
101 |
caatgagaaaattgtgagagtaagaaacgaacctcttgttcaacattgaagtaaacaacattgctctaagattaacaaacaaatgagaacgcttcagact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5026 |
caatgagaaaattgtgagagtaagaaacgaacctcttgttcaacattgaagtaaacaacattgctctaagattaacaaacaaatgagaacgcttcagact |
4927 |
T |
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| Q |
201 |
gagttctgag |
210 |
Q |
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|||||||||| |
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| T |
4926 |
gagttctgag |
4917 |
T |
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Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 34 - 155
Target Start/End: Original strand, 1446615 - 1446733
Alignment:
| Q |
34 |
ggaataaatgggtgcagagagtgagagaaagaagccctaatcatcgaagatgagtgtgattgaaatgcaatgagaaaattgtgagagtaagaaacgaacc |
133 |
Q |
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| T |
1446615 |
ggaataaatggatgcagagattgaaaaaaaggagccctactc---gaagatgagagtgattgaaatggaataagaaaattgtgagaataagaaacgaacc |
1446711 |
T |
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| Q |
134 |
tcttgttcaacattgaagtaaa |
155 |
Q |
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| T |
1446712 |
tcttcttcaacattgaagtaaa |
1446733 |
T |
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Target: scaffold0014 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 6 - 127
Target Start/End: Original strand, 123808 - 123925
Alignment:
| Q |
6 |
atcgttaacatgaaaatcatttgatttaggaataaatgggtgcagagagtgagagaaagaagccctaatcatcgaagatgagtgtgattgaaatgcaatg |
105 |
Q |
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| T |
123808 |
atcgttaacatcaaaatgatttgatttatgaataactggatgaagagattgagagaaa-aagccctaatc---gaagatgagagtgattgaaatggaatg |
123903 |
T |
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| Q |
106 |
agaaaattgtgagagtaagaaa |
127 |
Q |
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| T |
123904 |
agaaagttgtgagagtaagaaa |
123925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 80 - 165
Target Start/End: Original strand, 122601 - 122686
Alignment:
| Q |
80 |
aagatgagtgtgattgaaatgcaatgagaaaattgtgagagtaagaaacgaacctcttgttcaacattgaagtaaacaacattgct |
165 |
Q |
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| T |
122601 |
aagatgagaatgattgaaatggaatgagaaaactgtgagggtaagaaacgaacctgttcttcaacattgaagtaaacaacattgct |
122686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 3641959 - 3641895
Alignment:
| Q |
9 |
gttaacatgaaaatcatttgatttaggaataaatgggtgcagagagtgagagaaagaagccctaa |
73 |
Q |
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|||||||| ||||||||||||||||||||| || || || ||| ||||| ||||||||||||||| |
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| T |
3641959 |
gttaacatcaaaatcatttgatttaggaatgaagggatgtagatagtgacagaaagaagccctaa |
3641895 |
T |
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