View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8695_2 (Length: 411)
Name: NF8695_2
Description: NF8695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8695_2 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 372; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 16 - 411
Target Start/End: Original strand, 36883156 - 36883551
Alignment:
| Q |
16 |
agggaaaaacatcaagtgaaattttcaagacaacacacgaaaatcttatacaagagagcagcagttggctaaaagacacgtcagaatcctgctccgtcgt |
115 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36883156 |
agggcaaaacatcaagtgaaattttcaagacaacacacgaaaatcttatacaagagagcagcagttggctaaaagacacgtcagaatcctgctccgtcgt |
36883255 |
T |
|
| Q |
116 |
atctggccttgtagccggtgtttccttcgccacagcaagccaagtacctggtggcacaaccgatgaaggtagtccagtattagaaggcaagcctgcattc |
215 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
36883256 |
atctggccttgtagccggtgtttcctttgccacagcaagccaagtacctggcggcacaaccgatgaaggcagtccagtattagaaggcaagcctgcattt |
36883355 |
T |
|
| Q |
216 |
gacgcctttgccatttcttcacttatcggtctttgcttctctgttaccggactcatcatgttcctttcaattctcacttctcgaaaacaagccaaagatt |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
36883356 |
gacgcctttgccatttcttcacttatcggtctttgcttctctgttaccggactcatcatgttcctttcaattctcacttctcgtaaacaagccaaagatt |
36883455 |
T |
|
| Q |
316 |
ttcgtcgagatttgccactgaaacttcttcttgggctaagttctctctttgtgtccattgcttcaatgtttatttcattctgcactggacattttt |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36883456 |
ttcgtcgagatttgccactgaaacttcttcttgggctaagttctctctttgtgtccattgcttcaatgtttatttcattctgcactggacattttt |
36883551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 21 - 411
Target Start/End: Original strand, 36893164 - 36893554
Alignment:
| Q |
21 |
aaaacatcaagtgaaattttcaagacaacacacgaaaatcttatacaagagagcagcagttggctaaaagacacgtcagaatcctgctccgtcgtatctg |
120 |
Q |
| |
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| T |
36893164 |
aaaacatcaagagaaattttcaagaaaacacacaaaggtcttataaaagacagtagcgaatggctaaaagacacatcggaatcctgctctgttgtatctg |
36893263 |
T |
|
| Q |
121 |
gccttgtagccggtgtttccttcgccacagcaagccaagtacctggtggcacaaccgatgaaggtagtccagtattagaaggcaagcctgcattcgacgc |
220 |
Q |
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||||||||| ||||||||||| |||||||||||| |||||||| |||||||| ||| ||||||| || |||||||||||||||||||||||||| | |
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| T |
36893264 |
cccttgtagctggtgtttcctttgccacagcaagcgctgtacctggcggcacaactgatcaaggtagaccggtattagaaggcaagcctgcattcgatgt |
36893363 |
T |
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| Q |
221 |
ctttgccatttcttcacttatcggtctttgcttctctgttaccggactcatcatgttcctttcaattctcacttctcgaaaacaagccaaagattttcgt |
320 |
Q |
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||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||| |
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| T |
36893364 |
ctttgccatttcttcacttatcggtctctgcttctccgtaaccggactcatcatgtttctttctattctcacttctagaaaacaagccaaagattttcgt |
36893463 |
T |
|
| Q |
321 |
cgagatttgccactgaaacttcttcttgggctaagttctctctttgtgtccattgcttcaatgtttatttcattctgcactggacattttt |
411 |
Q |
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| T |
36893464 |
cgcgatttgccattgaaacttcttcttgggttaagttctctttttgtgtccattgcttcaatgtttgtttcattctgcactggacattttt |
36893554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 81 - 403
Target Start/End: Original strand, 36903029 - 36903348
Alignment:
| Q |
81 |
tggctaaaagacacgtcagaatcctgctccgtcgtatctggccttgtagccggtgtttccttcgccacagcaagccaagtacctggtggcacaaccgatg |
180 |
Q |
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||||||||| |||| |||| |||||||| || ||| | | ||||| || |||| ||||||| ||||| |||| ||||||||| || ||||| || |
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| T |
36903029 |
tggctaaaaaacacagcagattcctgctcggttgtagccgcgcttgtcgctggtgcttccttcaccacaacaagtgcagtacctggcggaacaac---tg |
36903125 |
T |
|
| Q |
181 |
aaggtagtccagtattagaaggcaagcctgcattcgacgcctttgccatttcttcacttatcggtctttgcttctctgttaccggactcatcatgttcct |
280 |
Q |
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| T |
36903126 |
agggtagaccagtattagaaggcaatcctgcattcaatgtcttcctctttgcttcgcttagtggcctttgtttctctttcaccgcactcatcatgttcct |
36903225 |
T |
|
| Q |
281 |
ttcaattctcacttctcgaaaacaagccaaagattttcgtcgagatttgccactgaaacttcttcttgggctaagttctctctttgtgtccattgcttca |
380 |
Q |
| |
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|| ||||||| |||| ||||| ||| ||||||||||| | |||||||||||||||||| | | ||||||| ||| || |||||||| |||||||| |
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| T |
36903226 |
ttttgttctcacatctcaaaaacgagcaaaagattttcgcagggatttgccactgaaactttatatcgggctaatttcactttttgtgtcgattgcttct |
36903325 |
T |
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| Q |
381 |
atgtttatttcattctgcactgg |
403 |
Q |
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||| || |||| ||||||||||| |
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| T |
36903326 |
atgattgtttcgttctgcactgg |
36903348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 270 - 364
Target Start/End: Complemental strand, 20079220 - 20079126
Alignment:
| Q |
270 |
atcatgttcctttcaattctcacttctcgaaaacaagccaaagattttcgtcgagatttgccactgaaacttcttcttgggctaagttctctctt |
364 |
Q |
| |
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|||||||||||||| || ||||||||||||||||||| | |||| || | || | |||||| ||||||||||| ||||| ||||||||||||| |
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| T |
20079220 |
atcatgttcctttctatactcacttctcgaaaacaagtcgaagacttcaatagaaacttgccattgaaacttctttttgggttaagttctctctt |
20079126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 316
Target Start/End: Original strand, 23279752 - 23279862
Alignment:
| Q |
206 |
gcctgcattcgacgcctttgccatttcttcacttatcggtctttgcttctctgttaccggactcatcatgttcctttcaattctcacttctcgaaaacaa |
305 |
Q |
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||||||||| || || ||||| | |||||| | || |||||||| |||||||| || | |||| | |||||||| || || ||||||||||||||| || |
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| T |
23279752 |
gcctgcatttgatgcatttgctttgtcttcagtaattggtctttgtttctctgtcactgcactcgtaatgttcctgtccatactcacttctcgaaaagaa |
23279851 |
T |
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| Q |
306 |
gccaaagattt |
316 |
Q |
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||||||||||| |
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| T |
23279852 |
gccaaagattt |
23279862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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