View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8695_3 (Length: 375)
Name: NF8695_3
Description: NF8695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8695_3 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 28 - 366
Target Start/End: Original strand, 56277301 - 56277642
Alignment:
| Q |
28 |
attctcacacgcgttccggccaagcctttgcttagcatgaaatgcatttccagagggtggaacaacatcatttcaagccgttcattcatcaaagatcaac |
127 |
Q |
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| T |
56277301 |
attctcacacgcgttccggccaaacctttgcttagcatgaaatgcatttccagaggttggaaccacatcatttcaagccgttcattcatcaaagatcaac |
56277400 |
T |
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| Q |
128 |
tcaaaaacactaatcttgttttaaatgcttttattgttcaagataggtacatgttctgcaaacacgatgttaaaaccattagttacatccctgtccaacc |
227 |
Q |
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| T |
56277401 |
tcaaaaacacaaatcttgttttaaatggttttattgttcaagataggtacatgttctgcaaacacgatgttaaaaccattagttacattcctgtggaacc |
56277500 |
T |
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| Q |
228 |
caaa---aacgctgctaaactagttgttcaccacaatgttttttcttttcttcctcaagatgttgtgcttttgtcatcttgtaaaggaattctttgctgc |
324 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | || |||||||||||| |||||||| |
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| T |
56277501 |
caaaaacaacgctgctaaactagttgttcaccacaatgttttttcttttcttcctcaagatgttgttgttttggcttcctgtaaaggaattgtttgctgc |
56277600 |
T |
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| Q |
325 |
cgtacctgttttccttccccaaatccaaccatctatctctgc |
366 |
Q |
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| T |
56277601 |
cgtacctgttttccttccccaaatccaaccatctatctctgc |
56277642 |
T |
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