View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8695_4 (Length: 372)

Name: NF8695_4
Description: NF8695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8695_4
NF8695_4
[»] chr7 (2 HSPs)
chr7 (104-361)||(30435873-30436130)
chr7 (1-43)||(30435770-30435812)
[»] chr3 (3 HSPs)
chr3 (284-361)||(47767234-47767311)
chr3 (104-178)||(47767085-47767158)
chr3 (1-41)||(47765330-47765370)
[»] chr5 (1 HSPs)
chr5 (112-208)||(26839182-26839279)
[»] chr4 (1 HSPs)
chr4 (143-208)||(50974309-50974374)


Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 104 - 361
Target Start/End: Original strand, 30435873 - 30436130
Alignment:
Q  104 gtatcgctaaaattgaaatacggatattgaatttcgatttaattttaccttgagttggaatgcatgactgattcagttgtgttgccagagagatggaaat 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  30435873 gtatcgctaaaattgaaatacggatattgaatttcgatttaattttaccttgagttggaatgcatgactgattcagttgtggtgccagagagatggaaat 30435972  T
Q  204 cgtctctgtgaggttgcagttgcaacggtttcgacagcatattagaggcggtggttgtaggtgtagttgtggttgtggacttgtggttgacaccggtaga 303  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  30435973 cgtctctgtgaagttgcagttgcaacagtttcgacagcatattagaggcggtggttgtaggtgtggttgtggttgtggacttgtggttgacaccggtaga 30436072  T
Q  304 tggagatgtatgtgaattgggagttgatgcttattcttactccatgattctcttctct 361  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  30436073 tggagatgtatgtgaatcgggagttgatgcttattcttactccatgattctcttctct 30436130  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 30435770 - 30435812
Alignment:
Q  1 ggaattagaggactgactcaataaagttaccattgattcactg 43  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  30435770 ggaattagaggactgactcaatatagttaccattgattcactg 30435812  T

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Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 284 - 361
Target Start/End: Original strand, 47767234 - 47767311
Alignment:
Q  284 ttgtggttgacaccggtagatggagatgtatgtgaattgggagttgatgcttattcttactccatgattctcttctct 361  Q
    ||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||| | ||||||||||||||||||||    
T  47767234 ttgtggttgacaccggtagatggagatatatgtgaatcgggagatgatgcttattatgactccatgattctcttctct 47767311  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 104 - 178
Target Start/End: Original strand, 47767085 - 47767158
Alignment:
Q  104 gtatcgctaaaattgaaatacggatattgaatttcgatttaattttaccttgagttggaatgcatgactgattca 178  Q
    ||||| |||||||||||||||| ||| ||||||| | || ||||||||||||||||||||| |||||||||||||    
T  47767085 gtatcactaaaattgaaatacg-atactgaattttgtttaaattttaccttgagttggaatccatgactgattca 47767158  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 47765330 - 47765370
Alignment:
Q  1 ggaattagaggactgactcaataaagttaccattgattcac 41  Q
    ||||||| ||||||||||||| ||||||| |||||||||||    
T  47765330 ggaattataggactgactcaagaaagttatcattgattcac 47765370  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 112 - 208
Target Start/End: Original strand, 26839182 - 26839279
Alignment:
Q  112 aaaattgaaatacggatattgaatttcgatt-taattttaccttgagttggaatgcatgactgattcagttgtgttgccagagagatggaaatcgtct 208  Q
    |||| |||||| |||||| ||||||| |||| || ||||||||||||| |||||   ||||||||||||||| | ||||| ||||||| |||| ||||    
T  26839182 aaaagtgaaattcggatactgaattttgattatagttttaccttgagtcggaatcggtgactgattcagttgcggtgccacagagatgcaaatggtct 26839279  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 143 - 208
Target Start/End: Original strand, 50974309 - 50974374
Alignment:
Q  143 taattttaccttgagttggaatgcatgactgattcagttgtgttgccagagagatggaaatcgtct 208  Q
    |||||||||||||||| |||||   ||||||||||||||| | ||||||||||||| |||| ||||    
T  50974309 taattttaccttgagtcggaatcggtgactgattcagttgcggtgccagagagatgcaaatggtct 50974374  T

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