View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8695_5 (Length: 349)
Name: NF8695_5
Description: NF8695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8695_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 8004233 - 8004571
Alignment:
| Q |
1 |
cagacatctatctgatagatgagccaagtgcatatcttgattcggaacagcgtattgttgctgcaaaagtcattaagaggtttattcttcatgcaaagaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8004233 |
cagacatctatctgatagatgagccaagtgcatatcttgattcagaacagcgtattgttgctgcaaaagtcattaagaggtttattcttcatgcaaagaa |
8004332 |
T |
|
| Q |
101 |
aacagcctttatcgttgagcatgatttcatcatggcaacttatcttgctgacagagttatcgtttatgagggtcaaccttcaattaattgtactgcaaac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8004333 |
aacagcctttatcgttgagcatgatttcatcatggcaacttatcttgctgacaaagttatcgtttatgagggtcaaccttcaattaattgtactgcaaac |
8004432 |
T |
|
| Q |
201 |
tgtccacaatcattgcttactgggatgaatcttttcttatctgtaagtgtcattgtttttcaatggtttcattaattcgttcctttttaaaaattcaggg |
300 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8004433 |
tgtccacaatcattgcttaccgggatgaaccttttcttatctgtaagtgtcattgtttttcaatggtttcattaattcgttcctttttaaaaattcaggg |
8004532 |
T |
|
| Q |
301 |
tatcacacacgttaaaattaaaaaattatgttctctctg |
339 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8004533 |
tatcacacacgttaaaattaaaaaattatgttctctctg |
8004571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 7900873 - 7900541
Alignment:
| Q |
1 |
cagacatctatctgatagatgagccaagtgcatatcttgattcggaacagcgtattgttgctgcaaaagtcattaagaggtttattcttcatgcaaagaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7900873 |
cagacatctatctgatagatgagccaagtgcatatcttgattccgaacagcgtattgtagttgcaaaagtcattaagaggtttattcttcatgcaaagaa |
7900774 |
T |
|
| Q |
101 |
aacagcctttatcgttgagcatgatttcatcatggcaacttatcttgctgacagagttatcgtttatgagggtcaaccttcaa-ttaattgtactgcaaa |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||| |||||| ||||||||| |
|
|
| T |
7900773 |
aacagcctttatcgttgagcatgatttcatcatggcaaattatcttgctgacaaagttatcgttcttgagggtcaaccttcaatttaattttactgcaaa |
7900674 |
T |
|
| Q |
200 |
ctgtccacaatcattgcttactgggatgaatcttttcttatctgtaagtgtcattgtttttcaatggtttcattaattcgttcctttttaaaaattcagg |
299 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
7900673 |
ctgtccacaatcactgcttactgggatgaaccttttcttatctgtaagtgtcattgtttttcaatggtttcattaattcgtccctttttaaaaatttagg |
7900574 |
T |
|
| Q |
300 |
gtatcacacacgttaaaattaaaaaattatgtt |
332 |
Q |
| |
|
|||||| || ||||||||| |||||||||||| |
|
|
| T |
7900573 |
gtatcatgcatgttaaaatttaaaaattatgtt |
7900541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 51518553 - 51518882
Alignment:
| Q |
1 |
cagacatctatctgatagatgagccaagtgcatatcttgattcggaacagcgtattgttgctgcaaaagtcattaagaggtttattcttcatgcaaagaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
51518553 |
cagacatctatctgatagatgagccaagtgcatatcttgattccgaacagcgtattgttgctgcaaaagtcatcaagaggtttattcttcatgcaaagaa |
51518652 |
T |
|
| Q |
101 |
aacagcctttatcgttgagcatgatttcatcatggcaacttatcttgctgacagagttatcgtttatgagggtcaaccttcaattaattgtactgcaaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
51518653 |
aacagcctttatcgttgagcatgatttcatcatggcaacttatcttgctgacagagttattgtttatgagggtcaaccttcaattgactgtactgcaaat |
51518752 |
T |
|
| Q |
201 |
tgtccacaatcattgcttactgggatgaatcttttcttatctgtaagtgtcattgtttttcaatggtttcattaattcgttcctttttaaaaattcaggg |
300 |
Q |
| |
|
||||||||||||||||| || |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||| |||| |
|
|
| T |
51518753 |
tgtccacaatcattgctgaccgggatgaaccttttcttatctgtaagtgtcgttgtttttcaatggtttcattaattcattccgttttaaaaatttaggg |
51518852 |
T |
|
| Q |
301 |
tatcacacacgttaaaattaaaaaattatg |
330 |
Q |
| |
|
|||||| | ||||||||| ||||| |||| |
|
|
| T |
51518853 |
tatcacgaaagttaaaatttaaaaagtatg |
51518882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 1300619 - 1300350
Alignment:
| Q |
1 |
cagacatctatctgatagatgagccaagtgcatatcttgattcggaacagcgtattgttgctgcaaaagtcattaagaggtttattcttcatgcaaagaa |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
1300619 |
cagacatttatctgatagatgagccaagtgcatatcttgattccgaacagcgtattattgctgcaaaagttatcaagaggtttattcttcatgcaaagaa |
1300520 |
T |
|
| Q |
101 |
aacagcctttatcgttgagcatgatttcatcatggcaacttatcttgctgacagagttatcgtttatgagggtcaaccttcaattaattgtactgcaaac |
200 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
1300519 |
aacagcctttgtggttgagcatgatttcatcatggcaacttatcttgctgacagagttattgtttatgagggtcaaccttcaattgactgtactgcaaat |
1300420 |
T |
|
| Q |
201 |
tgtccacaatcattgcttactgggatgaatcttttcttatctgtaagtgtcattgtttttcaatggtttc |
270 |
Q |
| |
|
| |||||||||| |||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
1300419 |
tctccacaatcactgctgactgggatgaaccttttcttatcagtaagtgtcattgtttttcaatggtttc |
1300350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University