View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8696_low_3 (Length: 300)
Name: NF8696_low_3
Description: NF8696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8696_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 292
Target Start/End: Original strand, 41987888 - 41988158
Alignment:
| Q |
18 |
ctatcttattgaatagtacaagctttagccattcgtggcaagaaaagctacaaagtacaacacgtacgaaaaatcaaagaacagaaaagttagcaacaac |
117 |
Q |
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| T |
41987888 |
ctatcttattgaatagtacaagctttagccattcgtggcaagaaaagctacaaagtacaacacgtacgaaaaatcaaagaacagaaaagttagcaacaac |
41987987 |
T |
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| Q |
118 |
attttttctttcaccactctcttatgaggaaaaaatcatgtggaatggatcccaccaaacaggtaatgaaagcaaaaataaatcataaatgaagttcaca |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41987988 |
attttttctttcaccactctcttatgaggaaaaaatcatgtggaatggatcccaccaaacaggtaatgaaagcaaaaataaatcataaatgaagttcacc |
41988087 |
T |
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| Q |
218 |
taatgataaaccatactagtctctcttcccttctttctttcttgtgaaccatcgtcaaaattctagtttcttctc |
292 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||| |
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| T |
41988088 |
taatgataaaccatactagtctctcttccc----ttctttcttgtgaaccatcgccaaaactctagtttcttctc |
41988158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 292
Target Start/End: Complemental strand, 1220625 - 1220355
Alignment:
| Q |
18 |
ctatcttattgaatagtacaagctttagccattcgtggcaagaaaagctacaaagtacaacacgtacgaaaaatcaaagaacagaaaagttagcaacaac |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
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| T |
1220625 |
ctatcttattgaatagtacaagctttagccattcgtggcaagaatagctacaaagtacaacacatatgaaaaatcaaagaacagaaaagttagcaacaac |
1220526 |
T |
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| Q |
118 |
attttttctttcaccactctcttatgaggaaaaaatcatgtggaatggatcccaccaaacaggtaatgaaagcaaaaataaatcataaatgaagttcaca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1220525 |
attttttctttcaccactctcttatgaggaaaaaatcatgtggaatggatcccaccaaacaggtaatgaaagcaaaaataaatcataaatgaagttcatc |
1220426 |
T |
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| Q |
218 |
taatgataaaccatactagtctctcttcccttctttctttcttgtgaaccatcgtcaaaattctagtttcttctc |
292 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||| |
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| T |
1220425 |
gaatgataaaccatactagtctctcttcccttctt----tcttgtgaaccatcgtcaaaactctaatttcttctc |
1220355 |
T |
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