View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8697_high_11 (Length: 241)

Name: NF8697_high_11
Description: NF8697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8697_high_11
NF8697_high_11
[»] chr5 (15 HSPs)
chr5 (1-221)||(38452773-38452993)
chr5 (1-219)||(38169919-38170137)
chr5 (1-219)||(38220037-38220255)
chr5 (4-219)||(38182466-38182681)
chr5 (4-219)||(38185708-38185923)
chr5 (4-219)||(38188450-38188665)
chr5 (4-219)||(38209692-38209907)
chr5 (4-219)||(38212434-38212649)
chr5 (4-219)||(38215675-38215890)
chr5 (183-223)||(38443500-38443540)
chr5 (4-96)||(38443690-38443782)
chr5 (4-39)||(38156187-38156222)
chr5 (182-215)||(38155994-38156027)
chr5 (107-177)||(38443570-38443637)
chr5 (13-61)||(38452701-38452749)


Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 38452773 - 38452993
Alignment:
Q  1 acgtcaaatacaattttagaatatcttcaaattcatcatccataacatgtagtccgcgaaatttcttcatctcagcttttgtaaccgtgtccttagtcgc 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38452773 acgtcaaatacaattttagaatatcttcaaattcatcattcataacatgtagtccgcgaaatttcttcatctcagcttttgtaaccgtgtccttagtcgc 38452872  T
Q  101 catgaacggaggtggaggcgtagtaggaggagatgaatattcttcaaaaggagaaacttgaacggaattgagcgagtcggcggaagccaaagaatcaaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||||||    
T  38452873 catgaacggaggtggaggcgtagtaggaggagatgaatattcttcaaaaggagaaacttgaacggaattgagcgagtcgacggaagttaaagaatcaaaa 38452972  T
Q  201 gatgccttgttgttgttaaca 221  Q
    |||||||||||||||||||||    
T  38452973 gatgccttgttgttgttaaca 38452993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 38170137 - 38169919
Alignment:
Q  1 acgtcaaatacaattttagaatatcttcaaattcatcatccataacatgtagtccgcgaaatttcttcatctcagcttttgtaaccgtgtccttagtcgc 100  Q
    ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38170137 acgtcaaatacaattttagaatatcttcaaattcatcattcacaacatgtagtccgcgaaatttcttcatctcagcttttgtaaccgtgtccttagtcgc 38170038  T
Q  101 catgaacggaggtggaggcgtagtaggaggagatgaatattcttcaaaaggagaaacttgaacggaattgagcgagtcggcggaagccaaagaatcaaaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| | | ||||||||||||||||||||    
T  38170037 catgaacggaggtggaggcgtagtaggaggagatgaatattcttcaaaaggagaaactcgaacgaaattgagcgatttgacggaagccaaagaatcaaaa 38169938  T
Q  201 gatgccttgttgttgttaa 219  Q
    |||||||||||||||||||    
T  38169937 gatgccttgttgttgttaa 38169919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 38220255 - 38220037
Alignment:
Q  1 acgtcaaatacaattttagaatatcttcaaattcatcatccataacatgtagtccgcgaaatttcttcatctcagcttttgtaaccgtgtccttagtcgc 100  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38220255 acgtcaaataaaattttagaatatcttcaaattcatcattcataacatgtagtccgcgaaatttcttcatctcagcttttgtaaccgtgtccttagtcgc 38220156  T
Q  101 catgaacggaggtggaggcgtagtaggaggagatgaatattcttcaaaaggagaaacttgaacggaattgagcgagtcggcggaagccaaagaatcaaaa 200  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |  |||||||||||||||||||    
T  38220155 catggacggaggtggaggcgtagtaggaggagatgaatattcttcaaaaggagagacttgaacggaattgagcgatttgatggaagccaaagaatcaaaa 38220056  T
Q  201 gatgccttgttgttgttaa 219  Q
    |||||||||||||||||||    
T  38220055 gatgccttgttgttgttaa 38220037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 4 - 219
Target Start/End: Original strand, 38182466 - 38182681
Alignment:
Q  4 tcaaatacaattttagaatatcttcaaattcatcatccataacatgtagtccgcgaaatttcttcatctcagcttttgtaaccgtgtccttagtcgccat 103  Q
    ||||||| |||||||||||||||||||||||||||| || |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  38182466 tcaaatataattttagaatatcttcaaattcatcattcacaacatgtattccgcaaaatttcttcatctcagcttttgtaaccgtgtccttagtcgccat 38182565  T
Q  104 gaacggaggtggaggcgtagtaggaggagatgaatattcttcaaaaggagaaacttgaacggaattgagcgagtcggcggaagccaaagaatcaaaagat 203  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  38182566 gaacggatgtggaggcgtagtaggaggagatgaatattcttcaaaaggaaaaacttgaacggaattgagcgagtcgacggaagccaaagaatcaaaagat 38182665  T
Q  204 gccttgttgttgttaa 219  Q
    ||||||||||||||||    
T  38182666 gccttgttgttgttaa 38182681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 4 - 219
Target Start/End: Complemental strand, 38185923 - 38185708
Alignment:
Q  4 tcaaatacaattttagaatatcttcaaattcatcatccataacatgtagtccgcgaaatttcttcatctcagcttttgtaaccgtgtccttagtcgccat 103  Q
    ||||||| |||||||||||||||||||||||||||| || |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  38185923 tcaaatataattttagaatatcttcaaattcatcattcacaacatgtattccgcaaaatttcttcatctcagcttttgtaaccgtgtccttagtcgccat 38185824  T
Q  104 gaacggaggtggaggcgtagtaggaggagatgaatattcttcaaaaggagaaacttgaacggaattgagcgagtcggcggaagccaaagaatcaaaagat 203  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  38185823 gaacggatgtggaggcgtagtaggaggagatgaatattcttcaaaaggaaaaacttgaacggaattgagcgagtcgacggaagccaaagaatcaaaagat 38185724  T
Q  204 gccttgttgttgttaa 219  Q
    ||||||||||||||||    
T  38185723 gccttgttgttgttaa 38185708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 4 - 219
Target Start/End: Complemental strand, 38188665 - 38188450
Alignment:
Q  4 tcaaatacaattttagaatatcttcaaattcatcatccataacatgtagtccgcgaaatttcttcatctcagcttttgtaaccgtgtccttagtcgccat 103  Q
    ||||||| |||||||||||||||||||||||||||| || |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  38188665 tcaaatataattttagaatatcttcaaattcatcattcacaacatgtattccgcaaaatttcttcatctcagcttttgtaaccgtgtccttagtcgccat 38188566  T
Q  104 gaacggaggtggaggcgtagtaggaggagatgaatattcttcaaaaggagaaacttgaacggaattgagcgagtcggcggaagccaaagaatcaaaagat 203  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  38188565 gaacggatgtggaggcgtagtaggaggagatgaatattcttcaaaaggaaaaacttgaacggaattgagcgagtcgacggaagccaaagaatcaaaagat 38188466  T
Q  204 gccttgttgttgttaa 219  Q
    ||||||||||||||||    
T  38188465 gccttgttgttgttaa 38188450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 4 - 219
Target Start/End: Original strand, 38209692 - 38209907
Alignment:
Q  4 tcaaatacaattttagaatatcttcaaattcatcatccataacatgtagtccgcgaaatttcttcatctcagcttttgtaaccgtgtccttagtcgccat 103  Q
    ||||||| |||||||||||||||||||||||||||| || |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  38209692 tcaaatataattttagaatatcttcaaattcatcattcacaacatgtattccgcaaaatttcttcatctcagcttttgtaaccgtgtccttagtcgccat 38209791  T
Q  104 gaacggaggtggaggcgtagtaggaggagatgaatattcttcaaaaggagaaacttgaacggaattgagcgagtcggcggaagccaaagaatcaaaagat 203  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  38209792 gaacggatgtggaggcgtagtaggaggagatgaatattcttcaaaaggaaaaacttgaacggaattgagcgagtcgacggaagccaaagaatcaaaagat 38209891  T
Q  204 gccttgttgttgttaa 219  Q
    ||||||||||||||||    
T  38209892 gccttgttgttgttaa 38209907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 4 - 219
Target Start/End: Original strand, 38212434 - 38212649
Alignment:
Q  4 tcaaatacaattttagaatatcttcaaattcatcatccataacatgtagtccgcgaaatttcttcatctcagcttttgtaaccgtgtccttagtcgccat 103  Q
    ||||||| |||||||||||||||||||||||||||| || |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  38212434 tcaaatataattttagaatatcttcaaattcatcattcacaacatgtattccgcaaaatttcttcatctcagcttttgtaaccgtgtccttagtcgccat 38212533  T
Q  104 gaacggaggtggaggcgtagtaggaggagatgaatattcttcaaaaggagaaacttgaacggaattgagcgagtcggcggaagccaaagaatcaaaagat 203  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  38212534 gaacggatgtggaggcgtagtaggaggagatgaatattcttcaaaaggaaaaacttgaacggaattgagcgagtcgacggaagccaaagaatcaaaagat 38212633  T
Q  204 gccttgttgttgttaa 219  Q
    ||||||||||||||||    
T  38212634 gccttgttgttgttaa 38212649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 4 - 219
Target Start/End: Complemental strand, 38215890 - 38215675
Alignment:
Q  4 tcaaatacaattttagaatatcttcaaattcatcatccataacatgtagtccgcgaaatttcttcatctcagcttttgtaaccgtgtccttagtcgccat 103  Q
    ||||||| |||||||||||||||||||||||||||| || |||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  38215890 tcaaatataattttagaatatcttcaaattcatcattcacaacatgtattccgcaaaatttcttcatctcagcttttgtaaccgtgtccttactcgccat 38215791  T
Q  104 gaacggaggtggaggcgtagtaggaggagatgaatattcttcaaaaggagaaacttgaacggaattgagcgagtcggcggaagccaaagaatcaaaagat 203  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  38215790 gaacggatgtggaggcgtagtaggaggagatgaatattcttcaaaaggaaaaacttgaacggaattgagcgagtcgacggaagccaaagaatcaaaagat 38215691  T
Q  204 gccttgttgttgttaa 219  Q
    ||||||||||||||||    
T  38215690 gccttgttgttgttaa 38215675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 183 - 223
Target Start/End: Complemental strand, 38443540 - 38443500
Alignment:
Q  183 gaagccaaagaatcaaaagatgccttgttgttgttaacagg 223  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  38443540 gaagccaaagaatcaaaagatgccttgttgttgttaacagg 38443500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 96
Target Start/End: Complemental strand, 38443782 - 38443690
Alignment:
Q  4 tcaaatacaattttagaatatcttcaaattcatcatccataacatgtagtccgcgaaatttcttcatctcagcttttgtaaccgtgtccttag 96  Q
    ||||| ||| |||||||||||||||||||||||||| ||  | ||| |||||  |||||| |||||||| || |||||| ||||| |||||||    
T  38443782 tcaaaaacagttttagaatatcttcaaattcatcattcacgatatgcagtccatgaaattgcttcatcttagtttttgtgaccgtatccttag 38443690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 39
Target Start/End: Complemental strand, 38156222 - 38156187
Alignment:
Q  4 tcaaatacaattttagaatatcttcaaattcatcat 39  Q
    ||||| ||||||||||||||||||||||||||||||    
T  38156222 tcaaaaacaattttagaatatcttcaaattcatcat 38156187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 215
Target Start/End: Complemental strand, 38156027 - 38155994
Alignment:
Q  182 ggaagccaaagaatcaaaagatgccttgttgttg 215  Q
    |||||||||||||| |||||||||||||||||||    
T  38156027 ggaagccaaagaattaaaagatgccttgttgttg 38155994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 177
Target Start/End: Complemental strand, 38443637 - 38443570
Alignment:
Q  107 cggaggtggaggcgtagtaggaggagatgaatattcttcaaaaggagaaacttgaacggaattgagcgagt 177  Q
    |||||||||||| |||||| |||||||| ||| |||| ||   |||| ||| |||||||||||||||||||    
T  38443637 cggaggtggaggtgtagtaagaggagataaatcttctaca---ggaggaacatgaacggaattgagcgagt 38443570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 38452701 - 38452749
Alignment:
Q  13 attttagaatatcttcaaattcatcatccataacatgtagtccgcgaaa 61  Q
    |||||||||||||||| |||||||||| ||  |||||||||||| ||||    
T  38452701 attttagaatatcttcgaattcatcattcacgacatgtagtccgtgaaa 38452749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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