View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8697_high_13 (Length: 238)

Name: NF8697_high_13
Description: NF8697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8697_high_13
NF8697_high_13
[»] chr5 (9 HSPs)
chr5 (2-222)||(10046575-10046787)
chr5 (169-222)||(10887357-10887410)
chr5 (174-222)||(10866955-10867003)
chr5 (174-222)||(10873302-10873350)
chr5 (174-222)||(10878373-10878421)
chr5 (174-222)||(10883444-10883492)
chr5 (2-43)||(10867101-10867142)
chr5 (2-43)||(10887227-10887268)
chr5 (2-38)||(39676649-39676685)


Alignment Details
Target: chr5 (Bit Score: 148; Significance: 3e-78; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 2 - 222
Target Start/End: Complemental strand, 10046787 - 10046575
Alignment:
Q  2 tttaatactttgtaatctcgcaaatctacttgacctagataacaaaatcagtcaatcaaattaataaaaatctataaagcattaacacgcagacactcaa 101  Q
    ||||||| | ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10046787 tttaatattctgtaatctcgcaaatctacttgacctgaataacaaaatcagtcaatcaaattaataaaaatctataaagcattaacacgcagacactcaa 10046688  T
Q  102 tataagagtatgcatgttgacatgacatgttgacactggtaataatttaataatttaaaagtaagtagaaaattacttgttgaaagtgtgagagagagaa 201  Q
    ||||||||| | | |||| |||||||| ||| ||||||||||||||        |||||||||||||||||||||||||||||||||||||||||| |||    
T  10046687 tataagagtttacgtgttaacatgacacgtttacactggtaataat--------ttaaaagtaagtagaaaattacttgttgaaagtgtgagagagggaa 10046596  T
Q  202 tcaaaattttgaggatcttct 222  Q
    |||||||||||||||||||||    
T  10046595 tcaaaattttgaggatcttct 10046575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 169 - 222
Target Start/End: Original strand, 10887357 - 10887410
Alignment:
Q  169 gaaaattacttgttgaaagtgtgagagagagaatcaaaattttgaggatcttct 222  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  10887357 gaaaattacttgttgaaagtgtgagagagggaatcaaaattttgaggatcttct 10887410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 10867003 - 10866955
Alignment:
Q  174 ttacttgttgaaagtgtgagagagagaatcaaaattttgaggatcttct 222  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  10867003 ttacttgttgaaagtgtgagagagggaatcaaaattttgaggatcttct 10866955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 10873302 - 10873350
Alignment:
Q  174 ttacttgttgaaagtgtgagagagagaatcaaaattttgaggatcttct 222  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  10873302 ttacttgttgaaagtgtgagagagggaatcaaaattttgaggatcttct 10873350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 10878373 - 10878421
Alignment:
Q  174 ttacttgttgaaagtgtgagagagagaatcaaaattttgaggatcttct 222  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  10878373 ttacttgttgaaagtgtgagagagggaatcaaaattttgaggatcttct 10878421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 10883444 - 10883492
Alignment:
Q  174 ttacttgttgaaagtgtgagagagagaatcaaaattttgaggatcttct 222  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  10883444 ttacttgttgaaagtgtgagagagggaatcaaaattttgaggatcttct 10883492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 10867142 - 10867101
Alignment:
Q  2 tttaatactttgtaatctcgcaaatctacttgacctagataa 43  Q
    ||||||||| |||||||| |||||||||||||||||| ||||    
T  10867142 tttaatactctgtaatcttgcaaatctacttgacctaaataa 10867101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 10887227 - 10887268
Alignment:
Q  2 tttaatactttgtaatctcgcaaatctacttgacctagataa 43  Q
    ||||||||| |||||||| |||||||||||||||||| ||||    
T  10887227 tttaatactctgtaatcttgcaaatctacttgacctaaataa 10887268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 39676685 - 39676649
Alignment:
Q  2 tttaatactttgtaatctcgcaaatctacttgaccta 38  Q
    ||||||| |||||||||| ||||||||||||||||||    
T  39676685 tttaatattttgtaatcttgcaaatctacttgaccta 39676649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University