View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8697_high_4 (Length: 330)
Name: NF8697_high_4
Description: NF8697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8697_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 148; Significance: 4e-78; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 135 - 314
Target Start/End: Complemental strand, 25977948 - 25977766
Alignment:
| Q |
135 |
aatcgcgtgttactttaacctatttga-tgtgtgttattttaacctgtttaatgcctattcagatctcgatcaaagacaggtcctcgctattaaaattga |
233 |
Q |
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| T |
25977948 |
aatcgcgtgttactttaacctatttgactgtatgttattttaatctgtttaatgcctattcagatctcgatcaaagacaggtcttcgctattaaaattga |
25977849 |
T |
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| Q |
234 |
ctatcacataaaatatttttgcaagtgctttaattttggtgaaatcgact--ctctacctcaaacatacgccatcagatcaca |
314 |
Q |
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| T |
25977848 |
ctatcacataaaatatttttacaagtgctttaattttggtgaaatcgactctctctacctcaaacatacgccatcagatcaca |
25977766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 24 - 106
Target Start/End: Complemental strand, 25978268 - 25978187
Alignment:
| Q |
24 |
tttgcccaactccaacgtctcttctctaaaccataaactttcttcattggtgtaaaaccaaagctattcaaattgaaaaaggt |
106 |
Q |
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| T |
25978268 |
tttgcccaactccaacgtctcttctctcaac-agaaactttcttcactggtgtaaaagcaaagctattcaaactgaaaaaggt |
25978187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 212
Target Start/End: Complemental strand, 25963673 - 25963597
Alignment:
| Q |
137 |
tcgcgtgttactttaacctatttgat-gtgtgttattttaacctgtttaatgcctattcagatctcgatcaaagaca |
212 |
Q |
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| T |
25963673 |
tcgcgtgttactttaccctatttgctcgccagttgttttaacctatttaatgtccattcagatctcgatcaaagaca |
25963597 |
T |
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