View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8697_low_1 (Length: 472)
Name: NF8697_low_1
Description: NF8697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8697_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 8e-96; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 70 - 338
Target Start/End: Complemental strand, 34227067 - 34226785
Alignment:
| Q |
70 |
tatccctaacttctacagaattcatcagtttaaaacaaataatttgctgaaaatgacaa----taaattccaaacatataattttcagaattgtccctaa |
165 |
Q |
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| T |
34227067 |
tatccctaactgctacagaattcatcagtttaaaacaaagaattttctgaaaatgacaaacaataaattcgaaacatgtaattttcataattgtccataa |
34226968 |
T |
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| Q |
166 |
ctttgcgcatttgagataaccaatgtggcacctacatgttcaatgacatgtttg-----gaggtacttaatgtaatacatcaacattaagttaagttcaa |
260 |
Q |
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| T |
34226967 |
ctttacgcatttgagataaccaatgtggcacctacatgttcaatgacatgtttgcatgcgagttacttaatatattacatcaacattaagttaagttcaa |
34226868 |
T |
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| Q |
261 |
tat-----atattgatgcatttggaaatcaaaatttaaaatgcataaactgcgagtttcaatatttaagttctagaatttttc |
338 |
Q |
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| T |
34226867 |
tatatataatattgatgcatttggaaatcaaaacttaaaatgcataaactgcgagtttcaatatttaagttctagaatttttc |
34226785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 408 - 456
Target Start/End: Complemental strand, 34226714 - 34226666
Alignment:
| Q |
408 |
gattgagagattaagagaagagatagagtgcagataaggtggtggataa |
456 |
Q |
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| T |
34226714 |
gattgagagattaagagaagagatagagtgcagataaggtggtggataa |
34226666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 34227131 - 34227093
Alignment:
| Q |
6 |
gtcaatgataaaatgaactatagaatgtttctcagcttc |
44 |
Q |
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| T |
34227131 |
gtcaatgataaaatgaactatagaatgtttctcagcttc |
34227093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 254 - 297
Target Start/End: Complemental strand, 13445660 - 13445617
Alignment:
| Q |
254 |
agttcaatatatattgatgcatttggaaatcaaaatttaaaatg |
297 |
Q |
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| T |
13445660 |
agttcaatatatattgatgcatttggaaatcaaaacttaaaatg |
13445617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 88 - 132
Target Start/End: Complemental strand, 48449557 - 48449513
Alignment:
| Q |
88 |
aattcatcagtttaaaacaaataatttgctgaaaatgacaataaa |
132 |
Q |
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| T |
48449557 |
aattcgtcagtttaaaacaaagaatatgctgaaaatgacaataaa |
48449513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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