View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8697_low_12 (Length: 246)

Name: NF8697_low_12
Description: NF8697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8697_low_12
NF8697_low_12
[»] chr3 (25 HSPs)
chr3 (1-229)||(35863437-35863665)
chr3 (58-223)||(3422359-3422524)
chr3 (4-223)||(44822315-44822524)
chr3 (1-158)||(7115797-7115954)
chr3 (1-157)||(22102020-22102175)
chr3 (1-157)||(22176967-22177123)
chr3 (27-158)||(22176540-22176671)
chr3 (27-158)||(22101595-22101726)
chr3 (1-75)||(35369168-35369242)
chr3 (1-158)||(28096381-28096532)
chr3 (58-158)||(34492251-34492351)
chr3 (9-154)||(53359591-53359744)
chr3 (1-75)||(3422539-3422613)
chr3 (1-158)||(7116391-7116551)
chr3 (76-158)||(26057516-26057598)
chr3 (154-223)||(53359775-53359844)
chr3 (127-223)||(51139488-51139579)
chr3 (127-223)||(28096538-28096636)
chr3 (19-75)||(26053753-26053809)
chr3 (168-223)||(31000963-31001018)
chr3 (154-223)||(7115695-7115765)
chr3 (149-223)||(35369360-35369434)
chr3 (1-44)||(34492163-34492206)
chr3 (154-223)||(34492372-34492442)
chr3 (71-158)||(35369265-35369352)
[»] chr4 (20 HSPs)
chr4 (1-223)||(5525113-5525339)
chr4 (1-158)||(44814602-44814759)
chr4 (1-223)||(11974479-11974699)
chr4 (1-229)||(10726456-10726682)
chr4 (1-229)||(10940225-10940451)
chr4 (1-158)||(3729577-3729734)
chr4 (58-223)||(38001627-38001801)
chr4 (1-158)||(12217052-12217208)
chr4 (1-158)||(9162455-9162612)
chr4 (61-158)||(5094011-5094109)
chr4 (127-223)||(3729740-3729839)
chr4 (149-221)||(54198012-54198084)
chr4 (75-167)||(54198088-54198180)
chr4 (127-223)||(44814765-44814856)
chr4 (1-76)||(44673180-44673255)
chr4 (1-75)||(38001540-38001614)
chr4 (149-223)||(44672986-44673060)
chr4 (1-60)||(54198222-54198281)
chr4 (154-223)||(12217236-12217305)
chr4 (58-110)||(44673116-44673168)
[»] chr5 (9 HSPs)
chr5 (1-223)||(28222101-28222327)
chr5 (9-151)||(38938493-38938635)
chr5 (1-103)||(28263703-28263805)
chr5 (127-223)||(28263549-28263647)
chr5 (58-158)||(1190577-1190677)
chr5 (149-214)||(1197385-1197450)
chr5 (169-221)||(38938446-38938498)
chr5 (24-75)||(1190511-1190562)
chr5 (166-223)||(14655670-14655727)
[»] chr8 (4 HSPs)
chr8 (9-223)||(24409592-24409809)
chr8 (19-223)||(26528309-26528509)
chr8 (1-158)||(24432324-24432481)
chr8 (127-223)||(24432487-24432586)
[»] chr2 (16 HSPs)
chr2 (2-223)||(27339586-27339801)
chr2 (2-223)||(44972794-44973017)
chr2 (1-158)||(7061953-7062110)
chr2 (1-158)||(13594606-13594762)
chr2 (1-158)||(44539354-44539511)
chr2 (9-158)||(25047777-25047925)
chr2 (9-158)||(35193244-35193391)
chr2 (9-158)||(43528537-43528687)
chr2 (1-126)||(309939-310064)
chr2 (130-223)||(43528694-43528790)
chr2 (154-223)||(7062138-7062207)
chr2 (4-103)||(2222160-2222259)
chr2 (127-223)||(25047679-25047771)
chr2 (127-223)||(13594768-13594854)
chr2 (168-223)||(35193152-35193207)
chr2 (130-223)||(44539258-44539345)
[»] chr6 (17 HSPs)
chr6 (9-223)||(2438622-2438829)
chr6 (1-223)||(3676794-3677010)
chr6 (1-223)||(3676468-3676683)
chr6 (1-156)||(23915360-23915516)
chr6 (16-144)||(16316522-16316650)
chr6 (58-168)||(27901035-27901145)
chr6 (2-158)||(32249764-32249922)
chr6 (1-158)||(2537150-2537301)
chr6 (127-223)||(32249664-32249758)
chr6 (149-223)||(10928163-10928237)
chr6 (60-158)||(10928045-10928142)
chr6 (154-223)||(17589873-17589942)
chr6 (154-219)||(2537329-2537394)
chr6 (149-195)||(27900986-27901032)
chr6 (3-65)||(27901177-27901239)
chr6 (16-75)||(10927974-10928031)
chr6 (177-223)||(23915266-23915312)
[»] chr7 (21 HSPs)
chr7 (1-222)||(39677928-39678149)
chr7 (1-223)||(35492268-35492480)
chr7 (59-217)||(11321014-11321172)
chr7 (1-223)||(47912222-47912439)
chr7 (9-158)||(9303117-9303266)
chr7 (1-158)||(20621080-20621237)
chr7 (9-158)||(9307555-9307704)
chr7 (127-224)||(20657545-20657645)
chr7 (9-126)||(9329789-9329906)
chr7 (9-158)||(47221099-47221243)
chr7 (1-68)||(9306731-9306798)
chr7 (130-223)||(47221249-47221346)
chr7 (1-68)||(9302293-9302360)
chr7 (154-223)||(41755175-41755244)
chr7 (165-229)||(9301945-9302009)
chr7 (165-229)||(9306383-9306447)
chr7 (9-75)||(11321188-11321254)
chr7 (167-223)||(20618232-20618288)
chr7 (1-48)||(41755371-41755418)
chr7 (61-109)||(9302384-9302432)
chr7 (180-223)||(9329902-9329945)
[»] chr1 (23 HSPs)
chr1 (2-158)||(237266-237422)
chr1 (54-223)||(29698912-29699076)
chr1 (1-158)||(14494883-14495040)
chr1 (1-184)||(14245973-14246150)
chr1 (60-219)||(43574945-43575111)
chr1 (24-158)||(20132881-20133018)
chr1 (54-223)||(8528295-8528463)
chr1 (1-154)||(9041314-9041466)
chr1 (127-223)||(14495046-14495137)
chr1 (149-214)||(50231826-50231891)
chr1 (75-168)||(9046137-9046230)
chr1 (127-223)||(20132777-20132875)
chr1 (58-158)||(49266117-49266217)
chr1 (9-75)||(50231626-50231692)
chr1 (9-90)||(29699077-29699157)
chr1 (154-221)||(49266238-49266305)
chr1 (4-61)||(43575131-43575188)
chr1 (58-158)||(50231706-50231805)
chr1 (168-223)||(237459-237514)
chr1 (16-75)||(9046263-9046322)
chr1 (154-218)||(23997698-23997762)
chr1 (80-158)||(23997592-23997670)
chr1 (149-184)||(9046099-9046134)
[»] scaffold0025 (2 HSPs)
scaffold0025 (9-158)||(3319-3469)
scaffold0025 (127-223)||(3214-3313)
[»] scaffold0123 (2 HSPs)
scaffold0123 (3-158)||(17060-17215)
scaffold0123 (127-229)||(16954-17054)
[»] scaffold0066 (2 HSPs)
scaffold0066 (28-158)||(56614-56744)
scaffold0066 (1-41)||(56556-56596)
[»] scaffold0990 (1 HSPs)
scaffold0990 (1-68)||(1049-1116)


Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 35863665 - 35863437
Alignment:
Q  1 ctcacaagaaactagcacaaaacaaaaactcatgttacttttttatcagcctcttttatgttgtacatatgtgttgttcccctcattacaaccgacgaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||    
T  35863665 ctcacaagaaactagcacaaaacaaaaactcatgttacttttttatcagccttttttatgttgtacgtatgtgttgttcccctcattacaaccgacaaag 35863566  T
Q  101 attgccaagtgttttcacatcccttacacaaaaaacagtatttccatgttattttattttattaatataagttactcttccttagcctttgatcaggtgt 200  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  35863565 attgccaagtattttcacatcccttacacaaaaaacagtatttccatgttattttattttattaatataagttactcttcattagcctttgatcaggtgt 35863466  T
Q  201 aacaaacgtgagcaaaaaataataataaa 229  Q
    |||||||||||||||||||||||||||||    
T  35863465 aacaaacgtgagcaaaaaataataataaa 35863437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 58 - 223
Target Start/End: Complemental strand, 3422524 - 3422359
Alignment:
Q  58 atgttgtacatatgtgttgttcccctcattacaaccgacgaagattgccaagtgttttcacatcccttacacaaaaaacagtatttccatgttattttat 157  Q
    ||||||||||| |||||||||||||||| ||  |||||| ||||||||||||| |||||| ||||||||||||||||| |||| ||  || |||||||||    
T  3422524 atgttgtacatctgtgttgttcccctcaataataccgacaaagattgccaagtattttcatatcccttacacaaaaaatagtactttgatattattttat 3422425  T
Q  158 tttattaatataagttactcttccttagcctttgatcaggtgtaacaaacgtgagcaaaaaataat 223  Q
    ||||||||||||||||| ||||||||||||||||||||  |||||||||||||| |||||||||||    
T  3422424 tttattaatataagttattcttccttagcctttgatcaattgtaacaaacgtgaacaaaaaataat 3422359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 4 - 223
Target Start/End: Original strand, 44822315 - 44822524
Alignment:
Q  4 acaagaaactagcacaaaacaaaaactcatgttacttttttatcagcctcttttatgttgtacatatgtgttgttcccctcattacaaccgacgaagatt 103  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||  |||| ||||||| || |||||| ||||||||| |||||||||| || |||    
T  44822315 acaaaaaactagcacaaaacataaactcatgttacttttttatcagccgattttttgttgtagatctgtgttattcccctcaatacaaccgacaaacatt 44822414  T
Q  104 gccaagtgttttcacatcccttacacaaaaaacagtatttccatgttattttattttattaatataagttactcttccttagcctttgatcaggtgtaac 203  Q
    ||||||| |||||| ||||||| ||||||||| ||||||||||| |||||||||          || ||||  |||||||||||||||||||  ||||||    
T  44822415 gccaagtattttcatatcccttccacaaaaaatagtatttccatattattttat----------tatgttatccttccttagcctttgatcaattgtaac 44822504  T
Q  204 aaacgtgagcaaaaaataat 223  Q
    ||||||||||||||||||||    
T  44822505 aaacgtgagcaaaaaataat 44822524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 7115954 - 7115797
Alignment:
Q  1 ctcacaagaaactagcacaaaacaaaaactcatgttacttttttatcagcctcttttatgttgtacatatgtgttgttcccctcattacaaccgacgaag 100  Q
    ||||||| ||||||||||| || ||| ||||||||||||||||||||||||  ||||||||||||||| ||||||| |||||||| |||||||||| ||     
T  7115954 ctcacaaaaaactagcacacaataaatactcatgttacttttttatcagccgattttatgttgtacatctgtgttgctcccctcaatacaaccgacaaaa 7115855  T
Q  101 attgccaagtgttttcacatcccttacacaaaaaacagtatttccatgttattttatt 158  Q
    |||||||||   ||||| ||||||| || |||||||| ||||||||| ||||||||||    
T  7115854 attgccaagaactttcatatcccttccataaaaaacaatatttccatattattttatt 7115797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 22102020 - 22102175
Alignment:
Q  1 ctcacaagaaactagcacaaaacaaaaactcatgttacttttttatcagcctcttttatgttgtacatatgtgttgttcccctcattacaaccgacgaag 100  Q
    ||||||| |||||||||| ||||||||| |||||||||||||||||||||| |||| ||||||||||| |||||||||||||||   ||||||||| |||    
T  22102020 ctcacaaaaaactagcactaaacaaaaagtcatgttacttttttatcagccgcttt-atgttgtacatttgtgttgttcccctcgacacaaccgacaaag 22102118  T
Q  101 attgccaagtgttttcacatcccttacacaaaaaacagtatttccatgttattttat 157  Q
    |||| ||||| |||||| ||| | | || ||||||| | |||||||| |||||||||    
T  22102119 attgtcaagtattttcatatctccttcataaaaaactgcatttccatattattttat 22102175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 22176967 - 22177123
Alignment:
Q  1 ctcacaagaaactagcacaaaacaaaaactcatgttacttttttatcagcctcttttatgttgtacatatgtgttgttcccctcattacaaccgacgaag 100  Q
    ||||||| |||| ||||| ||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||   ||||||||| |||    
T  22176967 ctcacaaaaaaccagcactaaacaaaaagtcatgttacttttttatcagccgcttttatgttgtacatttgtgttgttcccctcgacacaaccgacaaag 22177066  T
Q  101 attgccaagtgttttcacatcccttacacaaaaaacagtatttccatgttattttat 157  Q
    |||| ||||| |||||| |||   | || ||||||| | |||||||| |||||||||    
T  22177067 attgtcaagtattttcatatcttcttcataaaaaactgcatttccatattattttat 22177123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 27 - 158
Target Start/End: Original strand, 22176540 - 22176671
Alignment:
Q  27 aactcatgttacttttttatcagcctcttttatgttgtacatatgtgttgttcccctcattacaaccgacgaagattgccaagtgttttcacatccctta 126  Q
    ||||||||||||||||||||||  | ||||||| ||| |||| |||||||||||||||| |||||||||| |||||||| |||| | |||| |||||||     
T  22176540 aactcatgttacttttttatcaatcgcttttattttgcacatctgtgttgttcccctcaatacaaccgacaaagattgctaagtatattcatatcccttc 22176639  T
Q  127 cacaaaaaacagtatttccatgttattttatt 158  Q
    ||||||||||||||||||||  ||||||||||    
T  22176640 cacaaaaaacagtatttccacattattttatt 22176671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 27 - 158
Target Start/End: Original strand, 22101595 - 22101726
Alignment:
Q  27 aactcatgttacttttttatcagcctcttttatgttgtacatatgtgttgttcccctcattacaaccgacgaagattgccaagtgttttcacatccctta 126  Q
    ||||||||||||||||||||||  | ||||||| ||| |||| |||||||||||||||| ||||| |||| |||||||| |||| | |||| |||||||     
T  22101595 aactcatgttacttttttatcaatcgcttttattttgcacatttgtgttgttcccctcaatacaatcgacaaagattgctaagtatattcatatcccttc 22101694  T
Q  127 cacaaaaaacagtatttccatgttattttatt 158  Q
    ||||||||| ||||||||||  ||||||||||    
T  22101695 cacaaaaaatagtatttccacattattttatt 22101726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 35369168 - 35369242
Alignment:
Q  1 ctcacaagaaactagcacaaaacaaaaactcatgttacttttttatcagcctcttttatgttgtacatatgtgtt 75  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  35369168 ctcacaaaaaactagcacaaaacaaaaactcatgttacttttttatcagccgtttttatgttgtacatatgtgtt 35369242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 28096381 - 28096532
Alignment:
Q  1 ctcacaagaaactagcacaaaacaaaaactcatgttacttttttatcagcctcttttatgttgtacatatgtgttgttcccctcattacaaccgacgaag 100  Q
    ||||||| |||||||||||||| |||||||||||||||||||| |||| ||  |||||| | |||||| ||||||||||||||||     || ||| |||    
T  28096381 ctcacaaaaaactagcacaaaagaaaaactcatgttactttttcatcaaccaattttatatcgtacatctgtgttgttcccctca-----acggacaaag 28096475  T
Q  101 attgccaagtgttttcacatcccttacacaaaaaacagtatttccatgttattttatt 158  Q
    ||| |||||| |||||||| ||||| ||||||||||| |||||| || ||||||||||    
T  28096476 attaccaagtattttcaca-cccttccacaaaaaacaatatttctatattattttatt 28096532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 58 - 158
Target Start/End: Original strand, 34492251 - 34492351
Alignment:
Q  58 atgttgtacatatgtgttgttcccctcattacaaccgacgaagattgccaagtgttttcacatcccttacacaaaaaacagtatttccatgttattttat 157  Q
    |||||||||||||||||| ||||||||| |||||||||  ||||||| ||||| |||||| ||||||||||||||||||| |||||| || |||||||||    
T  34492251 atgttgtacatatgtgttcttcccctcaatacaaccgataaagattgtcaagtattttcatatcccttacacaaaaaacattatttctatattattttat 34492350  T
Q  158 t 158  Q
    |    
T  34492351 t 34492351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 9 - 154
Target Start/End: Original strand, 53359591 - 53359744
Alignment:
Q  9 aaactagcacaaaacaaaaactcatgttacttttttatcag--------cctcttttatgttgtacatatgtgttgttcccctcattacaaccgacgaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||        ||  |||||||||| |||| |||||| ||||||||| || ||| ||| |||    
T  53359591 aaactagcacaaaacaaaaactcatgttacttttttatcagtcgattttccgattttatgttgcacatttgtgttattcccctcaatataactgacaaag 53359690  T
Q  101 attgccaagtgttttcacatcccttacacaaaaaacagtatttccatgttattt 154  Q
    |||| ||||| |||||| |||| || || |||||||||||||||||| ||||||    
T  53359691 attgtcaagtattttcatatccattccataaaaaacagtatttccatattattt 53359744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 3422613 - 3422539
Alignment:
Q  1 ctcacaagaaactagcacaaaacaaaaactcatgttacttttttatcagcctcttttatgttgtacatatgtgtt 75  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||    
T  3422613 ctcacaaaaaactagcacaaaacaaaaactcatgttacttttttatcagccacttttacgttgtacatctgtgtt 3422539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 7116551 - 7116391
Alignment:
Q  1 ctcacaagaaactagcacaaaacaaaaactcatgttacttttttatcagcctcttt--tatgttgtacatatgtgttgttcccctcattacaaccgacga 98  Q
    ||||||| ||| ||||||||||||||||||  |||||||||||||||||| | |||  |||||||||||| |||||||||||||| | ||| | |||| |    
T  7116551 ctcacaaaaaattagcacaaaacaaaaacttgtgttacttttttatcagcttattttatatgttgtacatctgtgttgttccccttaatac-atcgacaa 7116453  T
Q  99 agattgccaagtgttttcacatccctt--acacaaaaaacagtatttccatgttattttatt 158  Q
    | |||| ||||| |||||| |||||||  ||| ||||||| || ||||||| ||||||||||    
T  7116452 aaattgtcaagtattttcatatcccttccacaaaaaaaactgtgtttccatattattttatt 7116391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 76 - 158
Target Start/End: Original strand, 26057516 - 26057598
Alignment:
Q  76 gttcccctcattacaaccgacgaagattgccaagtgttttcacatcccttacacaaaaaacagtatttccatgttattttatt 158  Q
    |||||||||| |||||||||| ||||||||||| | |||||| ||| ||||||||||||||||||||||||| ||||||||||    
T  26057516 gttcccctcaatacaaccgacaaagattgccaactattttcatatcgcttacacaaaaaacagtatttccatattattttatt 26057598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 154 - 223
Target Start/End: Original strand, 53359775 - 53359844
Alignment:
Q  154 ttattttattaatataagttactcttccttagcctttgatcaggtgtaacaaacgtgagcaaaaaataat 223  Q
    |||||||||||||||||||||||||||||||| |||||||||  ||||||||| ||||||||||||||||    
T  53359775 ttattttattaatataagttactcttccttagtctttgatcaattgtaacaaatgtgagcaaaaaataat 53359844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 127 - 223
Target Start/End: Complemental strand, 51139579 - 51139488
Alignment:
Q  127 cacaaaaaacagtatttccatgttattttattttattaatataagttactcttccttagcctttgatcaggtgtaacaaacgtgagcaaaaaataat 223  Q
    |||||||||||||||||||     || ||||||||||||||||||||||||||||||| ||||||||||  ||||||||| |||||| |||||||||    
T  51139579 cacaaaaaacagtatttcc-----atattattttattaatataagttactcttccttaacctttgatcaattgtaacaaatgtgagctaaaaataat 51139488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 127 - 223
Target Start/End: Original strand, 28096538 - 28096636
Alignment:
Q  127 cacaaaaaacagtatttcca--tgttattttattttattaatataagttactcttccttagcctttgatcaggtgtaacaaacgtgagcaaaaaataat 223  Q
    ||||||||||||||||||||  | || | ||||||||||||||||||||||| ||||||| ||||||||||  ||||||||||||||  ||||||||||    
T  28096538 cacaaaaaacagtatttccaattattttattattttattaatataagttactattccttaacctttgatcaattgtaacaaacgtgaagaaaaaataat 28096636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 26053753 - 26053809
Alignment:
Q  19 aaaacaaaaactcatgttacttttttatcagcctcttttatgttgtacatatgtgtt 75  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  26053753 aaaacaaaaactcatgttacttttttatcagccgcttttatgttgtacatctgtgtt 26053809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 31000963 - 31001018
Alignment:
Q  168 taagttactcttccttagcctttgatcaggtgtaacaaacgtgagcaaaaaataat 223  Q
    |||||||||||||||||| |||||||||| |||||| |||||||||||||||||||    
T  31000963 taagttactcttccttagactttgatcagttgtaactaacgtgagcaaaaaataat 31001018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 154 - 223
Target Start/End: Complemental strand, 7115765 - 7115695
Alignment:
Q  154 ttattttattaatataagttactcttccttagcctttgatcaggtgtaacaaacgtgagcaa-aaaataat 223  Q
    ||||||||||||||| ||||| ||||||||||||||| ||||  |||||||||||||||||| ||||||||    
T  7115765 ttattttattaatatgagttattcttccttagcctttaatcaattgtaacaaacgtgagcaacaaaataat 7115695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 149 - 223
Target Start/End: Original strand, 35369360 - 35369434
Alignment:
Q  149 ttattttattttattaatataagttactcttccttagcctttgatcaggtgtaacaaacgtgagcaaaaaataat 223  Q
    |||||||||||||||||||||||||| | | | ||||||||||||||  |||||||||| | |||||||||||||    
T  35369360 ttattttattttattaatataagttattttcctttagcctttgatcaattgtaacaaacataagcaaaaaataat 35369434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 34492163 - 34492206
Alignment:
Q  1 ctcacaagaaactagcacaaaacaaaaactcatgttactttttt 44  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  34492163 ctcacaaaaaactagcacaaaacaaaaactcatgttactttttt 34492206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 154 - 223
Target Start/End: Original strand, 34492372 - 34492442
Alignment:
Q  154 ttattttattaatataagttactcttccttagcctttgatcaggtgt-aacaaacgtgagcaaaaaataat 223  Q
    |||||||||||||| || ||||||||| || |||||||||||  ||| |||||||||||||||||||||||    
T  34492372 ttattttattaatacaaattactcttcttttgcctttgatcaattgtaaacaaacgtgagcaaaaaataat 34492442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 158
Target Start/End: Original strand, 35369265 - 35369352
Alignment:
Q  71 gtgttgttcccctcattacaaccgacgaagattgccaagtgttttcacatcccttacacaaaaaacagtatttccatgttattttatt 158  Q
    ||||||||||||||| |||  ||||| ||||||| ||| | |||||| | |||||| ||||||||||||||||  || ||||||||||    
T  35369265 gtgttgttcccctcaatactgccgacaaagattgtcaaatattttcataccccttaaacaaaaaacagtatttagatattattttatt 35369352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 134; Significance: 7e-70; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 5525113 - 5525339
Alignment:
Q  1 ctcacaagaaactagcacaaaacaaaaactcatgttacttttttatcagcctcttttatgttgtacatatg---tgttgttcccctcattacaaccgacg 97  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||   |||||||| ||||| ||||||| ||     
T  5525113 ctcacaaaaaactagcacaaaacaaaaactcatgttacttttttatcagccgattttatgttgtacatctgtgttgttgttcgcctcaatacaacccaca 5525212  T
Q  98 aagattgccaagtgttttcacatcccttacacaaaaaacagtatttccatgttatt---ttattttattaatataagttactcttccttagcctttgatc 194  Q
    ||||||||||||| |||||| ||||||| |||  |||||||||||||||| |||||   |||||||||||||||||||||||||||||||||||||||||    
T  5525213 aagattgccaagtattttcatatcccttccac--aaaacagtatttccatattattttattattttattaatataagttactcttccttagcctttgatc 5525310  T
Q  195 aggtgtaacaaacgtgagcaaaaaataat 223  Q
    |  ||||||||||||||||||||||||||    
T  5525311 aattgtaacaaacgtgagcaaaaaataat 5525339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 44814602 - 44814759
Alignment:
Q  1 ctcacaagaaactagcacaaaacaaaaactcatgttacttttttatcagcctcttttatgttgtacatatgtgttgttcccctcattacaaccgacgaag 100  Q
    ||||||| |||||||||||||||||||||||||||| ||||| ||||| ||  ||||||||||||||| |||||||||||||||| |||||||||| |||    
T  44814602 ctcacaaaaaactagcacaaaacaaaaactcatgtttcttttctatcaaccgattttatgttgtacatctgtgttgttcccctcaatacaaccgacaaag 44814701  T
Q  101 attgccaagtgttttcacatcccttacacaaaaaacagtatttccatgttattttatt 158  Q
    |||||||||| |||||||||||||| ||||||||||||| ||||||| ||||||||||    
T  44814702 attgccaagtattttcacatcccttccacaaaaaacagtgtttccatattattttatt 44814759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 11974699 - 11974479
Alignment:
Q  1 ctcacaagaaactagcacaaaacaaaaactcatgttacttttttatcagcctcttttatgttgtacatatgtgttgttcccctcattacaaccgacgaag 100  Q
    ||||||| ||||||||||||||||||||||||||||| ||| |||||| || |||||||| ||||||| |||||||||||||| | |||| ||||| |||    
T  11974699 ctcacaaaaaactagcacaaaacaaaaactcatgttattttcttatcatccgcttttatgctgtacatctgtgttgttccccttaatacagccgacaaag 11974600  T
Q  101 attgccaagtgttttcacatcccttacac-aaaaaacagtatttccatgttattttattttattaatataagttactcttcct--tagcctttgatcagg 197  Q
    ||| |||||| |||||| ||||||| ||| |||||||||||| |||     || ||||||| |||||||||||||||||||||  ||||| |||||||      
T  11974599 attaccaagtattttcatatcccttccacaaaaaaacagtatgtcc-----atattattttgttaatataagttactcttccttatagccgttgatcaac 11974505  T
Q  198 tgtaacaaacgtgagcaaaaaataat 223  Q
    |||||||||||||| |||||||||||    
T  11974504 tgtaacaaacgtgaacaaaaaataat 11974479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 10726456 - 10726682
Alignment:
Q  1 ctcacaagaaactagcacaaaacaaaaactcatgttacttttttatcagcctcttttatgttgtacatatgtgttgttcccctcattacaaccgacgaag 100  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||| |  ||||||||||||||| |||||||||||||||| |||||||||| |||    
T  10726456 ctcacaaaaaactagcacaaaataaaaactcatgttacttttttatcag-cgattttatgttgtacatctgtgttgttcccctcaatacaaccgac-aag 10726553  T
Q  101 attgccaagtgttttcacatcccttacacaaaaaacagtatttccatgttattttattttattaatataagttactcttccttagcctttgatcaggtgt 200  Q
    |||||||||| |  |||  |||||| |||| |||| |  |     |    || ||||||||||||||||||||||||||||||||||||||||||  |||    
T  10726554 attgccaagtataatcatgtcccttccacacaaaaaaaaaaaaaaaatccatattattttattaatataagttactcttccttagcctttgatcaattgt 10726653  T
Q  201 aacaaacgtgagcaaaaaataataataaa 229  Q
    |||||||||||||||||||||||| ||||    
T  10726654 aacaaacgtgagcaaaaaataatagtaaa 10726682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 10940225 - 10940451
Alignment:
Q  1 ctcacaagaaactagcacaaaacaaaaactcatgttacttttttatcagcctcttttatgttgtacatatgtgttgttcccctcattacaaccgacgaag 100  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||| |  ||||||||||||||| |||||||||||||||| |||||||||| |||    
T  10940225 ctcacaaaaaactagcacaaaataaaaactcatgttacttttttatcag-cgattttatgttgtacatctgtgttgttcccctcaatacaaccgac-aag 10940322  T
Q  101 attgccaagtgttttcacatcccttacacaaaaaacagtatttccatgttattttattttattaatataagttactcttccttagcctttgatcaggtgt 200  Q
    |||||||||| |  |||  |||||| |||| |||| |  |     |    || ||||||||||||||||||||||||||||||||||||||||||  |||    
T  10940323 attgccaagtataatcatgtcccttccacacaaaaaaaaaaaaaaaatccatattattttattaatataagttactcttccttagcctttgatcaattgt 10940422  T
Q  201 aacaaacgtgagcaaaaaataataataaa 229  Q
    |||||||||||||||||||||||| ||||    
T  10940423 aacaaacgtgagcaaaaaataatagtaaa 10940451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 3729577 - 3729734
Alignment:
Q  1 ctcacaagaaactagcacaaaacaaaaactcatgttacttttttatcagcctcttttatgttgtacatatgtgttgttcccctcattacaaccgacgaag 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| || ||   |||||||||||||| |||||||||||||||| ||||| |||| ||     
T  3729577 ctcacaaaaaactagcacaaaacaaaaactcatgttacttttttaccaaccgactttatgttgtacatctgtgttgttcccctcaatacaatcgacaaaa 3729676  T
Q  101 attgccaagtgttttcacatcccttacacaaaaaacagtatttccatgttattttatt 158  Q
    ||| |||||| |||||| ||||||| ||||||||||| ||||||||| ||||||||||    
T  3729677 atttccaagtattttcatatccctttcacaaaaaacaatatttccatattattttatt 3729734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 58 - 223
Target Start/End: Original strand, 38001627 - 38001801
Alignment:
Q  58 atgttgtacatatgtgttgttcccctcattacaaccgacgaagattgccaagtgttttcacatcccttacac-aaaaaacagtatttcca--------tg 148  Q
    ||||||||||| |||||||||||||||| |||||||||| ||||||||||||| |||||| ||||||||||| |||||||||||||||||        |     
T  38001627 atgttgtacatgtgtgttgttcccctcaatacaaccgacaaagattgccaagtattttcatatcccttacacaaaaaaacagtatttccatattattttt 38001726  T
Q  149 ttattttattttattaatataagttactcttccttagcctttgatcaggtgtaacaaacgtgagcaaaaaataat 223  Q
    |||||||||||||||||||||||||||| |||||||||| ||| |||  | ||||||||||||||||||||||||    
T  38001727 ttattttattttattaatataagttacttttccttagccattggtcaattataacaaacgtgagcaaaaaataat 38001801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 12217052 - 12217208
Alignment:
Q  1 ctcacaagaaactagcacaaaacaaaaactcatgttacttttttatcagcctcttttatgttgtacatatgtgttgttcccctcattacaaccgacgaag 100  Q
    ||||||| ||| |||||||||||||||||| |||||||||||||||||||   |||||||||||||||||||||||||||| ||| |||||||||| |||    
T  12217052 ctcacaaaaaattagcacaaaacaaaaacttatgttacttttttatcagcagattttatgttgtacatatgtgttgttcccttcaatacaaccgacaaag 12217151  T
Q  101 attgccaagtgttttcacatcccttacacaaaaaacagtatttccatgttattttatt 158  Q
    |||||||||| |||||| | || || || ||||||||| |||||||| ||||||||||    
T  12217152 attgccaagtattttcataaccgttcca-aaaaaacagcatttccatattattttatt 12217208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 9162612 - 9162455
Alignment:
Q  1 ctcacaagaaactagcacaaaacaaaaactcatgttacttttttatcagcctcttttatgttgtacatatgtgttgttcccctcattacaaccgacgaag 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| |  |||| | |||| ||| ||| |||||||||||| |||||||||| |||    
T  9162612 ctcacaaaaaactagcacaaaacaaaaactcatgttacttttttatcaggcaattttttattgtgcatctgtattgttcccctcaatacaaccgacaaag 9162513  T
Q  101 attgccaagtgttttcacatcccttacacaaaaaacagtatttccatgttattttatt 158  Q
    | |||||| | |||||| || ||||  |||||||||| ||||||||| ||||||||||    
T  9162512 aatgccaaatattttcatattccttctacaaaaaacaatatttccatattattttatt 9162455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 61 - 158
Target Start/End: Complemental strand, 5094109 - 5094011
Alignment:
Q  61 ttgtacatatgtgttgttcccctcattacaaccgacgaagattgccaagtgttttcacatcccttac-acaaaaaacagtatttccatgttattttatt 158  Q
    |||||||| |||||||||||||||| |||||||||| ||||||| ||||| |||||| ||||||| | |||||||||||||||||||| ||||||||||    
T  5094109 ttgtacatctgtgttgttcccctcaatacaaccgacaaagattgtcaagtattttcatatccctttcaacaaaaaacagtatttccatattattttatt 5094011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 127 - 223
Target Start/End: Original strand, 3729740 - 3729839
Alignment:
Q  127 cacaaaaaacagtatttccatgttattttat---tttattaatataagttactcttccttagcctttgatcaggtgtaacaaacgtgagcaaaaaataat 223  Q
    ||||||||||||||||||||| | |||||||   |||||||| |||||||||||||| ||| ||||||||||  ||||||||||||||||||||||||||    
T  3729740 cacaaaaaacagtatttccatataattttattattttattaacataagttactcttctttaacctttgatcaattgtaacaaacgtgagcaaaaaataat 3729839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 54198084 - 54198012
Alignment:
Q  149 ttattttattttattaatataagttactcttccttagcctttgatcaggtgtaacaaacgtgagcaaaaaata 221  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||  ||||||||||||||||||||||||    
T  54198084 ttattttattttattaatataagtttctctttcttagcctttgatcaattgtaacaaacgtgagcaaaaaata 54198012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 75 - 167
Target Start/End: Complemental strand, 54198180 - 54198088
Alignment:
Q  75 tgttcccctcattacaaccgacgaagattgccaagtgttttcacatcccttacacaaaaaacagtatttccatgttattttattttattaata 167  Q
    |||| |||||| |||||||||  ||||||| ||||| |||||| ||||||||||||||||||||||||| ||| | |||||||||||||||||    
T  54198180 tgtttccctcaatacaaccgataaagattgtcaagtattttcatatcccttacacaaaaaacagtattttcatatcattttattttattaata 54198088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 127 - 223
Target Start/End: Original strand, 44814765 - 44814856
Alignment:
Q  127 cacaaaaaacagtatttccatgttattttattttattaatataagttactcttccttagcctttgatcaggtgtaacaaacgtgagcaaaaaataat 223  Q
    |||||||||||||||||||     || |||||||||||||||||||||| ||| | ||| |||||||||  ||||||||||||||||||||||||||    
T  44814765 cacaaaaaacagtatttcc-----atattattttattaatataagttaccctttcatagtctttgatcaattgtaacaaacgtgagcaaaaaataat 44814856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 44673255 - 44673180
Alignment:
Q  1 ctcacaagaaactagcacaaaacaaaaactcatgttacttttttatcagcctcttttatgttgtacatatgtgttg 76  Q
    ||||||| ||| | ||||||||||||||||||||  |||||||||||| || |||||||||||||||| |||||||    
T  44673255 ctcacaaaaaagtggcacaaaacaaaaactcatgcaacttttttatcaaccgcttttatgttgtacatctgtgttg 44673180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 38001540 - 38001614
Alignment:
Q  1 ctcacaagaaactagcacaaaacaaaaactcatgttacttttttatcagcctcttttatgttgtacatatgtgtt 75  Q
    ||||||| ||||||||| | |||||||| |||| ||||||||||||||||| |||| ||||||||||| ||||||    
T  38001540 ctcacaaaaaactagcatagaacaaaaattcatattacttttttatcagccgctttaatgttgtacatttgtgtt 38001614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 149 - 223
Target Start/End: Complemental strand, 44673060 - 44672986
Alignment:
Q  149 ttattttattttattaatataagttactcttccttagcctttgatcaggtgtaacaaacgtgagcaaaaaataat 223  Q
    |||||||||||||||||||||| |||| ||||||||||||||||| |  | |||||| || ||||||||||||||    
T  44673060 ttattttattttattaatataacttacccttccttagcctttgataaattataacaaccgcgagcaaaaaataat 44672986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 54198281 - 54198222
Alignment:
Q  1 ctcacaagaaactagcacaaaacaaaaactcatgttacttttttatcagcctcttttatg 60  Q
    ||||||| |||||||||||||||||||||||||||| || |||||||| || ||||||||    
T  54198281 ctcacaaaaaactagcacaaaacaaaaactcatgttcctattttatcacccacttttatg 54198222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 223
Target Start/End: Original strand, 12217236 - 12217305
Alignment:
Q  154 ttattttattaatataagttactcttccttagcctttgatcaggtgtaacaaacgtgagcaaaaaataat 223  Q
    |||||| |||||||||||||||||||||||| ||||||||||    |||||||||| |||||||| ||||    
T  12217236 ttatttcattaatataagttactcttccttaacctttgatcaataataacaaacgtcagcaaaaagtaat 12217305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 110
Target Start/End: Complemental strand, 44673168 - 44673116
Alignment:
Q  58 atgttgtacatatgtgttgttcccctcattacaaccgacgaagattgccaagt 110  Q
    ||||| ||||| |||||||||||||||| |||||||||| |||||||||||||    
T  44673168 atgttttacatctgtgttgttcccctcaatacaaccgacaaagattgccaagt 44673116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 28222101 - 28222327
Alignment:
Q  1 ctcacaagaaactagcacaaaacaaaaactcatgttacttttttatcagcctcttttatgttgtacatatgtgttgttcccctcattacaaccgacgaag 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| | | |||||||||||| ||||||||||  ||    
T  28222101 ctcacaaaaaactagcacaaaacaaaaactcatgttacttttttatcagccgctttaatgttgtacatctatattgttcccctcaatacaaccgacatag 28222200  T
Q  101 attgccaagtgttttcacatcccttacacaaaaaacagtatttccat----gttattttattttattaatataagttactcttccttagcctttgatcag 196  Q
    |||||||||| |||||| | |||||  ||||||||||||||||||||     || ||||||||||||||||||||||||||||||||| ||||||||||     
T  28222201 attgccaagtattttcaaaccccttcaacaaaaaacagtatttccatttaattttttttattttattaatataagttactcttccttaacctttgatcaa 28222300  T
Q  197 gtgtaacaaacgtgagcaaaaaataat 223  Q
     |||||||||||| |||||||||||||    
T  28222301 ttgtaacaaacgtaagcaaaaaataat 28222327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 9 - 151
Target Start/End: Complemental strand, 38938635 - 38938493
Alignment:
Q  9 aaactagcacaaaacaaaaactcatgttacttttttatcagcctcttttatgttgtacatatgtgttgttcccctcattacaaccgacgaagattgccaa 108  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||||||| |||||| ||||||| || | |||||||||    
T  38938635 aaactagcacaaaacaaaaactcatgttacttttttatcagccggttttatgttgtacatctgtgttgtttccctcaatacaacccacaacgattgccaa 38938536  T
Q  109 gtgttttcacatcccttacacaaaaaacagtatttccatgtta 151  Q
    || |||||| |||||||||||||||||||||||||||| ||||    
T  38938535 gtattttcatatcccttacacaaaaaacagtatttccaagtta 38938493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 28263805 - 28263703
Alignment:
Q  1 ctcacaagaaactagcacaaaacaaaaactcatgttacttttttatcagcctcttttatgttgtacatatgtgttgttcccctcattacaaccgacgaag 100  Q
    ||||||| |||||||||||||||||||||| ||||| ||||||||||||||  ||||||||||||||| |||||||||||||||| || |||||||||||    
T  28263805 ctcacaaaaaactagcacaaaacaaaaacttatgtttcttttttatcagccgattttatgttgtacatctgtgttgttcccctcaatataaccgacgaag 28263706  T
Q  101 att 103  Q
    |||    
T  28263705 att 28263703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 127 - 223
Target Start/End: Complemental strand, 28263647 - 28263549
Alignment:
Q  127 cacaaaaaacagtatttccatgttattttatt--ttattaatataagttactcttccttagcctttgatcaggtgtaacaaacgtgagcaaaaaataat 223  Q
    ||||||||||||||||||||| ||||||||||  |||||||||||||||| ||||||||| ||||||||||  ||||||||||||||||||||||||||    
T  28263647 cacaaaaaacagtatttccatattattttattatttattaatataagttattcttccttaacctttgatcaattgtaacaaacgtgagcaaaaaataat 28263549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 58 - 158
Target Start/End: Original strand, 1190577 - 1190677
Alignment:
Q  58 atgttgtacatatgtgttgttcccctcattacaaccgacgaagattgccaagtgttttcacatcccttacacaaaaaacagtatttccatgttattttat 157  Q
    |||||||| || ||| |||||||||||| |||||||||| ||||||||||||| |||||| ||| ||||||||||||||| ||||||||| |||||||||    
T  1190577 atgttgtatatctgtattgttcccctcaatacaaccgacaaagattgccaagtattttcatatctcttacacaaaaaacaatatttccatattattttat 1190676  T
Q  158 t 158  Q
    |    
T  1190677 t 1190677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 149 - 214
Target Start/End: Original strand, 1197385 - 1197450
Alignment:
Q  149 ttattttattttattaatataagttactcttccttagcctttgatcaggtgtaacaaacgtgagca 214  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||  |||||||||||| ||||    
T  1197385 ttattttattttattaatataagttacttttctttagcctttgatcaattgtaacaaacgtaagca 1197450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 221
Target Start/End: Complemental strand, 38938498 - 38938446
Alignment:
Q  169 aagttactcttccttagcctttgatcaggtgtaacaaacgtgagcaaaaaata 221  Q
    ||||||||||| |||||||||||||||  ||||||||||||||||||||||||    
T  38938498 aagttactctttcttagcctttgatcaattgtaacaaacgtgagcaaaaaata 38938446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 1190511 - 1190562
Alignment:
Q  24 aaaaactcatgttacttttttatcagcctcttttatgttgtacatatgtgtt 75  Q
    ||||| |||| ||||||||||||||||| |||||||||||||||||||||||    
T  1190511 aaaaattcatattacttttttatcagccgcttttatgttgtacatatgtgtt 1190562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 223
Target Start/End: Complemental strand, 14655727 - 14655670
Alignment:
Q  166 tataagttactcttccttagcctttgatcaggtgtaacaaacgtgagcaaaaaataat 223  Q
    ||||||||||||||||||| ||||||||||  ||||| ||| |||| |||||||||||    
T  14655727 tataagttactcttccttaacctttgatcaattgtaataaatgtgatcaaaaaataat 14655670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 124; Significance: 7e-64; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 9 - 223
Target Start/End: Original strand, 24409592 - 24409809
Alignment:
Q  9 aaactagcacaaaacaaaaactcatgttacttttttatcagcctcttttatgttgtacatatgtgttgttcccctcattacaaccgacgaagattgccaa 108  Q
    |||||||||||||| ||||||||||||||||||||||||| || |||||||||| ||||| ||||||||||| |||| || ||||||| ||||||| |||    
T  24409592 aaactagcacaaaataaaaactcatgttacttttttatcaaccgcttttatgttctacatctgtgttgttcctctcaatataaccgacaaagattgtcaa 24409691  T
Q  109 gtgttttcacatcccttacacaaaaaacagtatttccatgttatt---ttattttattaatataagttactcttccttagcctttgatcaggtgtaacaa 205  Q
    || |||||| ||||||| ||||||||||||||||||  | |||||   |||||||||||||| ||||||||||||||||||||||||||   ||||||||    
T  24409692 gtattttcatatcccttccacaaaaaacagtatttctgtattattttattattttattaatacaagttactcttccttagcctttgatctattgtaacaa 24409791  T
Q  206 acgtgagcaaaaaataat 223  Q
    ||||||||||||||||||    
T  24409792 acgtgagcaaaaaataat 24409809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 26528309 - 26528509
Alignment:
Q  19 aaaacaaaaactcatgttacttttttatcagcctcttttatgttgtacatatgtgttgttcccctcattacaaccgacgaagattgccaagtgttttcac 118  Q
    ||||| |||||||||||||  ||||||||||||  ||||||||||||||| |||||||||||||| | || ||||||| ||||||| | ||| |||| |     
T  26528309 aaaactaaaactcatgtta--tttttatcagccgattttatgttgtacatctgtgttgttccccttaatataaccgacaaagattgtctagtattttaat 26528406  T
Q  119 atcccttacacaaaaaacagtatttccatgttattttattttattaatataagttactcttccttagcctttgatcaggtgtaacaaacgtgagcaaaaa 218  Q
    ||||||| ||||||||||||||||||||| |||||||| | | |||   |||| |||||||||||| ||||||||||  |||||||||||||||||||||    
T  26528407 atcccttccacaaaaaacagtatttccatattattttactatttta--ttaagctactcttccttaacctttgatcaattgtaacaaacgtgagcaaaaa 26528504  T
Q  219 ataat 223  Q
    |||||    
T  26528505 ataat 26528509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 24432324 - 24432481
Alignment:
Q  1 ctcacaagaaactagcacaaaacaaaaactcatgttacttttttatcagcctcttttatgttgtacatatgtgttgttcccctcattacaaccgacgaag 100  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||| ||||  ||||||| ||||||| | |||||||||||||| |||||||||| |||    
T  24432324 ctcacaaaaaactagcataaaacaaaaactcatgttacttttttattagccgattttatgatgtacatctttgttgttcccctcaatacaaccgacaaag 24432423  T
Q  101 attgccaagtgttttcacatcccttacacaaaaaacagtatttccatgttattttatt 158  Q
    |||||||||| ||| || ||| ||| ||||||||||||||||| ||| ||||||||||    
T  24432424 attgccaagtatttacatatctcttccacaaaaaacagtattttcatattattttatt 24432481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 127 - 223
Target Start/End: Original strand, 24432487 - 24432586
Alignment:
Q  127 cacaaaaaacagtatttccatgttattttatt---ttattaatataagttactcttccttagcctttgatcaggtgtaacaaacgtgagcaaaaaataat 223  Q
    ||||||| ||||||||| ||| ||||||||||   ||| |||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||    
T  24432487 cacaaaacacagtattttcatattattttattattttactaatataagttactcttccttagcctttgatcaattgtaacagacgtgagcaaaaaataat 24432586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 123; Significance: 3e-63; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 2 - 223
Target Start/End: Original strand, 27339586 - 27339801
Alignment:
Q  2 tcacaagaaactagcacaaaacaaaaactcatgttacttttttatcagcctcttttatgttgtacatatgtgttgttcccctcattacaaccgacgaaga 101  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||| || |||||||||||||||| |||||||||| ||||    
T  27339586 tcacaaaaaactagcacaaaccaaaaactcatgttacttttttatcagccgcttttttgttgtaaatctgtgttgttcccctcaatacaaccgacaaaga 27339685  T
Q  102 ttgccaagtgttttcacatcccttacacaaaaaacagtatttccatgttattttattttattaatataagttactcttccttagcctttgatcaggtgta 201  Q
    ||||||||| |||| | |||||||| | |||||||| ||||||      || ||||||||||||||||||||||||| ||||||||||||||||  ||||    
T  27339686 ttgccaagtatttttatatcccttaaaaaaaaaacaatatttc------atattattttattaatataagttactctaccttagcctttgatcaattgta 27339779  T
Q  202 acaaacgtgagcaaaaaataat 223  Q
    |||||| |||||||||||||||    
T  27339780 acaaacttgagcaaaaaataat 27339801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 44973017 - 44972794
Alignment:
Q  2 tcacaagaaactagcacaaaacaaaaactcatgttacttttttatcagcctcttttatgttgtacatatgtgttgttcccctcattacaaccgacgaaga 101  Q
    |||||| ||||||||||| ||||||||||||| ||||||||||| |||||  ||||||||| ||||| |||||||||||||||| ||||||| || ||||    
T  44973017 tcacaaaaaactagcacacaacaaaaactcatattacttttttaccagccgtttttatgttctacatctgtgttgttcccctcaatacaaccaacaaaga 44972918  T
Q  102 ttgccaagtgttttcacatcccttacacaaaaaacagtatttccatgttatt--ttattttattaatataagttactcttccttagcctttgatcaggtg 199  Q
    |||| || | |||||| ||||||| ||||||||||||||||||||| |||||  |||||||||  |||||||||||| || |||||||||||||||  ||    
T  44972917 ttgctaaatattttcatatccctttcacaaaaaacagtatttccatattatttattattttatagatataagttactatttcttagcctttgatcaattg 44972818  T
Q  200 taacaaacgtgagcaaaaaataat 223  Q
    ||||||||||||||||||| ||||    
T  44972817 taacaaacgtgagcaaaaagtaat 44972794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 7061953 - 7062110
Alignment:
Q  1 ctcacaagaaactagcacaaaacaaaaactcatgttacttttttatcagcctcttttatgttgtacatatgtgttgttcccctcattacaaccgacgaag 100  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||| ||  ||||||||||||||| |||||||||||||||| |||||||||| |||    
T  7061953 ctcacaaaaaactagcacaaaacaaaaactcatgttacctttttatcaaccgattttatgttgtacatctgtgttgttcccctcaatacaaccgacaaag 7062052  T
Q  101 attgccaagtgttttcacatcccttacacaaaaaacagtatttccatgttattttatt 158  Q
    |||||||||| |||||| ||||||| |||||||||||||||||| || ||||||||||    
T  7062053 attgccaagtattttcatatcccttccacaaaaaacagtatttctatattattttatt 7062110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 13594606 - 13594762
Alignment:
Q  1 ctcacaagaaactagcacaaaacaaaaactcatgttacttttttatcagcctcttttatgttgtacatatgtgttgttcccctcattacaaccgacgaag 100  Q
    ||||||| ||| |||||||||  ||||||||||||||||||||||||||||  ||||| ||||||||| |||||||||||||||| |||||||||| |||    
T  13594606 ctcacaaaaaattagcacaaat-aaaaactcatgttacttttttatcagccgattttacgttgtacatctgtgttgttcccctcaatacaaccgacaaag 13594704  T
Q  101 attgccaagtgttttcacatcccttacacaaaaaacagtatttccatgttattttatt 158  Q
    |||||||||| |||||| ||||||| ||||||||| ||||||||||| ||||||||||    
T  13594705 attgccaagtattttcatatcccttccacaaaaaatagtatttccatattattttatt 13594762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 44539511 - 44539354
Alignment:
Q  1 ctcacaagaaactagcacaaaacaaaaactcatgttacttttttatcagcctcttttatgttgtacatatgtgttgttcccctcattacaaccgacgaag 100  Q
    ||||||| |||| ||||||||||||||| ||||||||||||||||||| ||  ||||||||||||||| ||||||||| |||||| |||||||||| |||    
T  44539511 ctcacaaaaaacaagcacaaaacaaaaaatcatgttacttttttatcaaccgattttatgttgtacatctgtgttgtttccctcaatacaaccgacaaag 44539412  T
Q  101 attgccaagtgttttcacatcccttacacaaaaaacagtatttccatgttattttatt 158  Q
     ||||||||| |||||| ||||||| ||||||||| | ||||||||| ||||||||||    
T  44539411 gttgccaagtattttcatatcccttccacaaaaaataatatttccatattattttatt 44539354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 9 - 158
Target Start/End: Complemental strand, 25047925 - 25047777
Alignment:
Q  9 aaactagcacaaaacaaaaactcatgttacttttttatcagcctcttttatgttgtacatatgtgttgttcccctcattacaaccgacgaagattgccaa 108  Q
    |||||||||| |||||||| |||||||||||||||||||||||  ||||||||| ||| | |||||||||||||||| |||||||||| |||||||||||    
T  25047925 aaactagcactaaacaaaatctcatgttacttttttatcagccaattttatgttatacgtctgtgttgttcccctcaatacaaccgacaaagattgccaa 25047826  T
Q  109 gtgttttcacatcccttacacaaaaaacagtatttccatgttattttatt 158  Q
    || |||||  ||||||| || |||||||||||||||||| ||||||||||    
T  25047825 gtattttcctatcccttcca-aaaaaacagtatttccatattattttatt 25047777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 9 - 158
Target Start/End: Complemental strand, 35193391 - 35193244
Alignment:
Q  9 aaactagcacaaaacaaaaactcatgttacttttttatcagcctcttttatgttgtacatatgtgttgttcccctcattacaaccgacgaagattgccaa 108  Q
    |||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||| ||||||||| |||||| |||||||||| |||||||||||    
T  35193391 aaactagcacaaaacaaaaacttatgttacttttttatcagccgattttatgttgtacatctgtgttgtt-ccctcaatacaaccgacaaagattgccaa 35193293  T
Q  109 gtgttttcacatcccttacacaaaaaacagta-tttccatgttattttatt 158  Q
    || |||||| ||  ||| |||||||||||||| ||||||| ||||||||||    
T  35193292 gtattttcatat--cttccacaaaaaacagtattttccatattattttatt 35193244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 9 - 158
Target Start/End: Original strand, 43528537 - 43528687
Alignment:
Q  9 aaactagcacaaaacaaaaactcatgttacttttttatcagcctcttttatgttgtacatatgtgttgttcc-cctcattacaaccgacgaagattgcca 107  Q
    |||||||||||||||||||| ||||||||||||||||||| ||  ||||||||||||||| |||||| |||| ||||| ||||| |||| ||||||| ||    
T  43528537 aaactagcacaaaacaaaaattcatgttacttttttatcaaccgattttatgttgtacatctgtgttattcctcctcaatacaatcgacaaagattgtca 43528636  T
Q  108 agtgttttcacatcccttacacaaaaaacagtatttccatgttattttatt 158  Q
    ||| ||||||| |||||| |||||||| || ||||||||| ||||||||||    
T  43528637 agtattttcacttcccttccacaaaaagcaatatttccatattattttatt 43528687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 309939 - 310064
Alignment:
Q  1 ctcacaagaaactagcacaaaacaaaaactcatgttacttttttatcagcctcttttatgttgtacatatgtgttgttcccctcattacaaccgacgaag 100  Q
    ||||||| ||| |||||||||||||||||||| ||||||| |||||||| |  ||||||||||||||| |||||||||||||||| |||||||||| |||    
T  309939 ctcacaaaaaaatagcacaaaacaaaaactcaagttacttctttatcagtcaattttatgttgtacatctgtgttgttcccctcaatacaaccgacaaag 310038  T
Q  101 attgccaagtgttttcacatccctta 126  Q
    |||||||||| |||||| ||||||||    
T  310039 attgccaagtattttcatatccctta 310064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 130 - 223
Target Start/End: Original strand, 43528694 - 43528790
Alignment:
Q  130 aaaaaacagtatttccatgttattttat---tttattaatataagttactcttccttagcctttgatcaggtgtaacaaacgtgagcaaaaaataat 223  Q
    |||||||||||||||||| |||||||||   |||||||||||||||||||||||||||||||||| |||  ||||| ||||||||||||||||||||    
T  43528694 aaaaaacagtatttccatattattttatgattttattaatataagttactcttccttagcctttggtcaattgtaataaacgtgagcaaaaaataat 43528790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 154 - 223
Target Start/End: Original strand, 7062138 - 7062207
Alignment:
Q  154 ttattttattaatataagttactcttccttagcctttgatcaggtgtaacaaacgtgagcaaaaaataat 223  Q
    ||||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  7062138 ttattttattaatataagtcactcttccttagcctttgatcaattgtaacaaacgtgagcaaaaaataat 7062207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 2222160 - 2222259
Alignment:
Q  4 acaagaaactagcacaaaacaaaaactcatgttacttttttatcagcctcttttatgttgtacatatgtgttgttcccctcattacaaccgacgaagatt 103  Q
    |||| |||||||||||||||||||| |||||||| |||||||| ||||  ||||||||||||||| | |||||||||||||| | |||| ||| ||||||    
T  2222160 acaaaaaactagcacaaaacaaaaattcatgttatttttttatgagccgattttatgttgtacatctatgttgttcccctcaatgcaacggacaaagatt 2222259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 127 - 223
Target Start/End: Complemental strand, 25047771 - 25047679
Alignment:
Q  127 cacaaaaaacagtatttccatgttattttattttattaatataagttactcttccttagcctttgatcaggtgtaacaaacgtgagcaaaaaataat 223  Q
    |||||||| || |||||| || |||||||||||    ||||||||||||||||||||||||||||||||  | ||||||||||| ||||||||||||    
T  25047771 cacaaaaaccattatttcaatattattttattt----aatataagttactcttccttagcctttgatcaattataacaaacgtgggcaaaaaataat 25047679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 127 - 223
Target Start/End: Original strand, 13594768 - 13594854
Alignment:
Q  127 cacaaaaaacagtatttccatgttattttattttattaatataagttactcttccttagcctttgatcaggtgtaacaaacgtgagcaaaaaataat 223  Q
    ||||||||||||||||||||| ||||||||||          |||||| |||||| |||||||||||||  ||||||||||||||||||||||||||    
T  13594768 cacaaaaaacagtatttccatattattttatt----------aagttattcttccatagcctttgatcaattgtaacaaacgtgagcaaaaaataat 13594854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 35193207 - 35193152
Alignment:
Q  168 taagttactcttccttagcctttgatcaggtgtaacaaacgtgagcaaaaaataat 223  Q
    ||||||||||||||||  ||||||||||  ||||||||||||||||||||||||||    
T  35193207 taagttactcttccttgacctttgatcaattgtaacaaacgtgagcaaaaaataat 35193152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 223
Target Start/End: Complemental strand, 44539345 - 44539258
Alignment:
Q  130 aaaaaacagtatttccatgttattttattttattaatataagttactcttccttagcctttgatcaggtgtaacaaacgtgagcaaaaaataat 223  Q
    ||||||||||||||||     || |||||||||||||||||||||||||| ||||| ||||||| |  || ||||||| |||||||||| ||||    
T  44539345 aaaaaacagtatttcc-----atattattttattaatataagttactctt-cttagtctttgataaattgaaacaaacatgagcaaaaagtaat 44539258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 112; Significance: 1e-56; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 9 - 223
Target Start/End: Complemental strand, 2438829 - 2438622
Alignment:
Q  9 aaactagcacaaaacaaaaactcatgttacttttttatcagcctcttttatgttgtacatatgtgttgttcccctcattacaaccgacgaagattgccaa 108  Q
    |||||| ||||||||||||  ||||||||||||||| ||| || |||||||||||||  | |||||||||||||||| ||||| |||| |||||||||||    
T  2438829 aaactaacacaaaacaaaatttcatgttacttttttttcaaccgcttttatgttgta--tctgtgttgttcccctcaatacaatcgacaaagattgccaa 2438732  T
Q  109 gtgttttcacatcccttacacaaaaaacagtatttccatgttattttattttattaatataagttactcttccttagcctttgatcaggtgtaacaaacg 208  Q
    || |||||| ||||||| ||||||||||||||||||     ||| ||||||||||||||||||||||||||||||| ||||||||||  |||||||||||    
T  2438731 gtattttcatatcccttccacaaaaaacagtatttc-----tatattattttattaatataagttactcttccttaacctttgatcaattgtaacaaacg 2438637  T
Q  209 tgagcaaaaaataat 223  Q
    |||||||| ||||||    
T  2438636 tgagcaaacaataat 2438622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 3676794 - 3677010
Alignment:
Q  1 ctcacaagaaactagcacaaaacaaaaactcatgttacttttttatcagcctcttttatgttgtacatatgtgttgttcccctcattacaaccgacgaag 100  Q
    ||||||| |||||| ||||||||||||  ||||||||||||||| ||| |  |||||| ||||||||| | |||||||||||||| ||||| |||| |||    
T  3676794 ctcacaaaaaactatcacaaaacaaaatttcatgttactttttt-tcaactgcttttacgttgtacatttatgttgttcccctcaatacaatcgacaaag 3676892  T
Q  101 attgccaagtgttttcacatcccttacacaaaaaacagtatttccatgttattttattttattaatataagttactcttccttagcctttgatcaggtgt 200  Q
    |||||||||| |||||| ||||||| ||||||||||||||||||     ||| ||||||||||||||||||||| ||||||||| ||||||||||  |||    
T  3676893 attgccaagtattttcatatcccttccacaaaaaacagtatttc-----tatattattttattaatataagttattcttccttaacctttgatcaattgt 3676987  T
Q  201 aacaaacgtgagcaaaaaataat 223  Q
    |||||||||||||||||||||||    
T  3676988 aacaaacgtgagcaaaaaataat 3677010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 3676468 - 3676683
Alignment:
Q  1 ctcacaagaaactagcacaaaacaaaaactcatgttacttttttatcagcctcttttatgttgtacatatgtgttgttcccctcattacaaccgacgaag 100  Q
    ||||||| |||||| ||||||||||||  ||||||||||||||| ||| |   ||||| ||||||||| | |||||||||||||| |||||  ||| |||    
T  3676468 ctcacaaaaaactatcacaaaacaaaatttcatgttactttttt-tcaactgtttttacgttgtacatttatgttgttcccctcaatacaat-gacaaag 3676565  T
Q  101 attgccaagtgttttcacatcccttacacaaaaaacagtatttccatgttattttattttattaatataagttactcttccttagcctttgatcaggtgt 200  Q
    |||| ||||| |||||| ||||||| ||||||||||||||||||     ||| ||||||||||||||||||||| ||||||||| ||||||||||  |||    
T  3676566 attgtcaagtattttcatatcccttccacaaaaaacagtatttc-----tatattattttattaatataagttattcttccttaacctttgatcaattgt 3676660  T
Q  201 aacaaacgtgagcaaaaaataat 223  Q
    |||||||||||||||||||||||    
T  3676661 aacaaacgtgagcaaaaaataat 3676683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 23915516 - 23915360
Alignment:
Q  1 ctcacaagaaactagcacaaaacaaaaactcatgttacttttttatcagcctcttttatgttgtacatatgtg-ttgttcccctcattacaaccgacgaa 99  Q
    ||||||| ||||||||||||||| |||| |||||||||||||||||| | |  |||||||||||||||||||| || |||||| || |||||||||| ||    
T  23915516 ctcacaaaaaactagcacaaaactaaaagtcatgttacttttttatcggtcgattttatgttgtacatatgtgttttttccccccaatacaaccgacaaa 23915417  T
Q  100 gattgccaagtgttttcacatcccttacacaaaaaacagtatttccatgttatttta 156  Q
    ||||||||||| |||||| ||| ||| ||||||||||| ||||||||| ||||||||    
T  23915416 gattgccaagtattttcatatctcttccacaaaaaacaatatttccatattatttta 23915360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 144
Target Start/End: Complemental strand, 16316650 - 16316522
Alignment:
Q  16 cacaaaacaaaaactcatgttacttttttatcagcctcttttatgttgtacatatgtgttgttcccctcattacaaccgacgaagattgccaagtgtttt 115  Q
    ||||||||||||||||||||||||||||||||||||  |||| |||||||||| ||||||||| |||| | |||||||||| |||||||||| || ||||    
T  16316650 cacaaaacaaaaactcatgttacttttttatcagccgattttttgttgtacatctgtgttgtttcccttaatacaaccgacaaagattgccatgtatttt 16316551  T
Q  116 cacatcccttacacaaaaaacagtatttc 144  Q
     | ||||||| ||||||||||| ||||||    
T  16316550 tatatcccttccacaaaaaacaatatttc 16316522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 58 - 168
Target Start/End: Complemental strand, 27901145 - 27901035
Alignment:
Q  58 atgttgtacatatgtgttgttcccctcattacaaccgacgaagattgccaagtgttttcacatcccttacacaaaaaacagtatttccatgttattttat 157  Q
    ||||||||| | | |||||||||||||| |||||| ||| ||||||||||||| ||||||||| ||||||||||||||||||||||| || |||||||||    
T  27901145 atgttgtacgtctttgttgttcccctcaatacaactgacaaagattgccaagtattttcacatgccttacacaaaaaacagtatttcgatattattttat 27901046  T
Q  158 tttattaatat 168  Q
    |||||||||||    
T  27901045 tttattaatat 27901035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 2 - 158
Target Start/End: Complemental strand, 32249922 - 32249764
Alignment:
Q  2 tcacaagaaactagcacaaaacaaaaactcatgttactttttt-atcagcctcttttatgttgtacatatgtgttgttcccctcattacaaccgacgaag 100  Q
    |||||| | |||| || |||||||| |||||||||| |||||| |||||||  ||||||||||||||| |||||||||||||||| |||||||||| | |    
T  32249922 tcacaaaatactaccataaaacaaacactcatgttagtttttttatcagccgattttatgttgtacatctgtgttgttcccctcaatacaaccgacaagg 32249823  T
Q  101 attgccaagtgttttcacatcccttacac-aaaaaacagtatttccatgttattttatt 158  Q
    |||||||||| |||||| ||  ||| ||| |||||||| ||||||||| ||||||||||    
T  32249822 attgccaagtattttcatattgcttccacaaaaaaacaatatttccatattattttatt 32249764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 2537150 - 2537301
Alignment:
Q  1 ctcacaagaaactagcacaaaacaaaaactcatgttacttttttatcagcctcttttatgttgtacatatgtgttgttcccctcattacaaccgacgaag 100  Q
    ||||||| |||||||||||||||||||||||||| |||||||| ||||| |      ||||||||||| ||| |||||||||||| ||||| |||| ||     
T  2537150 ctcacaaaaaactagcacaaaacaaaaactcatgatacttttt-atcagtcg-----atgttgtacatctgttttgttcccctcaatacaatcgacaaaa 2537243  T
Q  101 attgccaagtgttttcacatcccttacacaaaaaacagtatttccatgttattttatt 158  Q
    |||||||||| |||||| |||| || ||| ||||||||||||||||| ||||||||||    
T  2537244 attgccaagtattttcatatccattccacgaaaaacagtatttccatattattttatt 2537301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 127 - 223
Target Start/End: Complemental strand, 32249758 - 32249664
Alignment:
Q  127 cacaaaaaacagtatttccatgttattttattttattaatataagttactcttccttagcctttgatcaggtgtaacaaacgtgagcaaaaaataat 223  Q
    ||||||||||||||||||||| |||||||||| ||||| ||  ||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  32249758 cacaaaaaacagtatttccatattattttattatattatta--agttactcttccttagcctttgatcaattgtaacaaacgtgagcaaaaaataat 32249664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 149 - 223
Target Start/End: Original strand, 10928163 - 10928237
Alignment:
Q  149 ttattttattttattaatataagttactcttccttagcctttgatcaggtgtaacaaacgtgagcaaaaaataat 223  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  10928163 ttattttcttttgttaatataagttactcttccttagcctttgatcaattgtaacaaacgtgagcaaaaaataat 10928237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 60 - 158
Target Start/End: Original strand, 10928045 - 10928142
Alignment:
Q  60 gttgtacatatgtgttgttcccctcattacaaccgacgaagattgccaagtgttttcacatcccttacacaaaaaacagtatttccatgttattttatt 158  Q
    ||||||||| ||||||||||| |||| |||||||||| |||| |||||||| |||||| || |||||||||||||||||||||||||| | ||||||||    
T  10928045 gttgtacatctgtgttgttccactcaatacaaccgacaaagactgccaagtattttcatat-ccttacacaaaaaacagtatttccatatcattttatt 10928142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 154 - 223
Target Start/End: Complemental strand, 17589942 - 17589873
Alignment:
Q  154 ttattttattaatataagttactcttccttagcctttgatcaggtgtaacaaacgtgagcaaaaaataat 223  Q
    |||||||||||||||||||||||||||||||||| |||||||  |||||||||||||| |||||||||||    
T  17589942 ttattttattaatataagttactcttccttagccgttgatcaactgtaacaaacgtgaacaaaaaataat 17589873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 154 - 219
Target Start/End: Original strand, 2537329 - 2537394
Alignment:
Q  154 ttattttattaatataagttactcttccttagcctttgatcaggtgtaacaaacgtgagcaaaaaa 219  Q
    ||||||||||||||||||||||| ||||||||||||||||||  |||||||||| |||||||||||    
T  2537329 ttattttattaatataagttacttttccttagcctttgatcaattgtaacaaacatgagcaaaaaa 2537394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 149 - 195
Target Start/End: Complemental strand, 27901032 - 27900986
Alignment:
Q  149 ttattttattttattaatataagttactcttccttagcctttgatca 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  27901032 ttattttattttattaatataagttactcttccttagcctttgatca 27900986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 27901239 - 27901177
Alignment:
Q  3 cacaagaaactagcacaaaacaaaaactcatgttacttttttatcagcctcttttatgttgta 65  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||| || |||||||||||||    
T  27901239 cacaaaaaactagcacaaagcaaaaactcatgttacttttttatcaaccgcttttatgttgta 27901177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 10927974 - 10928031
Alignment:
Q  16 cacaaaacaaaaactcatgttacttttttatcagcctcttttatgttgtacatatgtgtt 75  Q
    |||||||||||||||||||||||  ||||||||||| ||||||||||||| || ||||||    
T  10927974 cacaaaacaaaaactcatgttac--ttttatcagccgcttttatgttgtatatctgtgtt 10928031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 223
Target Start/End: Complemental strand, 23915312 - 23915266
Alignment:
Q  177 cttccttagcctttgatcaggtgtaacaaacgtgagcaaaaaataat 223  Q
    |||||||||||||||||||  |||||||||||||| || ||||||||    
T  23915312 cttccttagcctttgatcaattgtaacaaacgtgaacagaaaataat 23915266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 111; Significance: 4e-56; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 39677928 - 39678149
Alignment:
Q  1 ctcacaagaaactagcacaaaacaaaaactcatgttact-----tttttatcagcctcttttatgttgtacatatgtgttgttcccctcattacaaccga 95  Q
    ||||||| || || |||||||||||||||||||||| ||     |||||||||||| |||||||||||||||| ||| |||||||||||| |||||||||    
T  39677928 ctcacaaaaatcttgcacaaaacaaaaactcatgtttcttttaatttttatcagccgcttttatgttgtacatctgtattgttcccctcaatacaaccga 39678027  T
Q  96 cgaagattgccaagtgttttcacatcccttacacaaaaaacagtatttccatgttattttattttattaatataagttactcttccttagcctttgatca 195  Q
    | ||||||| ||||| ||||||||||||||  ||||||||||||||||     | || |||||||||||||||||||||||||||||||| |||||||||    
T  39678028 caaagattgtcaagtattttcacatcccttctacaaaaaacagtattt-----tcatattattttattaatataagttactcttccttagtctttgatca 39678122  T
Q  196 ggtgtaacaaacgtgagcaaaaaataa 222  Q
      |||||||||| ||||||||||||||    
T  39678123 attgtaacaaacatgagcaaaaaataa 39678149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 35492268 - 35492480
Alignment:
Q  1 ctcacaagaaactagcacaaaacaaaaactcatgttacttttttatcagcctcttttatgttgtacatatgtgttgttcccctcattacaaccgacgaag 100  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||| |||||||||||| ||| |||||||||| |||    
T  35492268 ctcacaaaaaactagcacaaaacaaaaactcatgttacttttttatcagccgattttgtgttgtacatttgtgttgttcccttcaatacaaccgacaaag 35492367  T
Q  101 attgccaagtgttttcacatcccttacacaaaaaacagtatttccatgttattttattttattaatataagttactcttccttagcctttgatcaggtgt 200  Q
    |||||||| |  ||||| ||||||| ||||||||||||||||||||| |||||||||          |||| ||  ||||||||| |||||||||  |||    
T  35492368 attgccaaataatttcatatcccttccacaaaaaacagtatttccatattattttat----------taagatatccttccttagtctttgatcaattgt 35492457  T
Q  201 aacaaacgtgagcaaaaaataat 223  Q
    ||||||| |||||||||||||||    
T  35492458 aacaaacatgagcaaaaaataat 35492480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 59 - 217
Target Start/End: Complemental strand, 11321172 - 11321014
Alignment:
Q  59 tgttgtacatatgtgttgttcccctcattacaaccgacgaagattgccaagtgttttcacatcccttacacaaaaaacagtatttccatgttattttatt 158  Q
    |||||||||| |||||||||||||||| |||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||| ||| ||||||| ||    
T  11321172 tgttgtacatctgtgttgttcccctcaatacaaccgacaaagattgccaagtattttcatatcccttacacaaaaaacagtattttcatattattttgtt 11321073  T
Q  159 ttattaatataagttactcttccttagcctttgatcaggtgtaacaaacgtgagcaaaa 217  Q
    ||||||||||||| |||| |||||||||| |||||||  ||||||||||||||| ||||    
T  11321072 ttattaatataaggtactattccttagccgttgatcaattgtaacaaacgtgagaaaaa 11321014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 47912222 - 47912439
Alignment:
Q  1 ctcacaagaaactagcacaaaacaaaaactcatgttacttttttatcagcctcttttatgttgtacatatgtgttgttcccctcattacaaccgacgaag 100  Q
    ||||||| |||||| ||||||||||||| |||| |||||||||||||||    ||||||||||||||| | |||||||||||| | |||||||||| |||    
T  47912222 ctcacaaaaaactatcacaaaacaaaaattcatattacttttttatcagtaaattttatgttgtacatttatgttgttcccctaaatacaaccgacaaag 47912321  T
Q  101 attgccaagtgttttcacatcccttacacaaaaaacagtatttccatgttattttattttattaatataagttactcttccttagcctttgatcaggtgt 200  Q
    |||||||||| |||||| |||||||  |||||||| |||||||||     || |||||||||||||||||||||| |||||||||| ||||||||  |||    
T  47912322 attgccaagtattttcatatccctttaacaaaaaatagtatttcc-----atattattttattaatataagttacccttccttagcttttgatcaattgt 47912416  T
Q  201 aacaaacgtgagcaaaaaataat 223  Q
    |||||| |||| |||||||||||    
T  47912417 aacaaaagtgaacaaaaaataat 47912439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 9 - 158
Target Start/End: Complemental strand, 9303266 - 9303117
Alignment:
Q  9 aaactagcacaaaacaaaaactcatgttacttttttatcagcctcttttatgttgtacatatgtgttgttcccctcattacaaccgacgaagattgccaa 108  Q
    |||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||| || |||| |||||||| |||||||||  ||||||| |||    
T  9303266 aaactagcacaaaacaaaaactcatgttacttttttattagccgattttatgttgtacatctgcgttgatcccctcaatacaaccgataaagattggcaa 9303167  T
Q  109 gtgttttcacatcccttacacaaaaaacagtatttccatgttattttatt 158  Q
    || |||||| ||||||| ||||||||||||||||||||| ||||||||||    
T  9303166 gtattttcatatcccttccacaaaaaacagtatttccatattattttatt 9303117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 20621237 - 20621080
Alignment:
Q  1 ctcacaagaaactagcacaaaacaaaaactcatgttacttttttatcagcctcttttatgttgtacatatgtgttgttcccctcattacaaccgacgaag 100  Q
    ||||||| |||||||||||||||||||||||| ||||| ||||||||||||  ||||||||||||||| |||||||||| ||||| ||||||| || |||    
T  20621237 ctcacaaaaaactagcacaaaacaaaaactcaagttacctttttatcagccgattttatgttgtacatctgtgttgttcgcctcaatacaacccacaaag 20621138  T
Q  101 attgccaagtgttttcacatcccttacacaaaaaacagtatttccatgttattttatt 158  Q
    |||||||| | |||||| ||||||| ||||||||||| ||||||||| ||||||||||    
T  20621137 attgccaaatattttcatatcccttccacaaaaaacaatatttccatattattttatt 20621080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 9 - 158
Target Start/End: Complemental strand, 9307704 - 9307555
Alignment:
Q  9 aaactagcacaaaacaaaaactcatgttacttttttatcagcctcttttatgttgtacatatgtgttgttcccctcattacaaccgacgaagattgccaa 108  Q
    |||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||| || |||| |||||||| |||||||||  || |||| |||    
T  9307704 aaactagcacaaaacaaaaactcatgttacttttttattagccgattttatgttgtacatctgcgttgatcccctcaatacaaccgataaaaattggcaa 9307605  T
Q  109 gtgttttcacatcccttacacaaaaaacagtatttccatgttattttatt 158  Q
    || |||||| ||||||| ||||||||||||||||||||| ||||||||||    
T  9307604 gtattttcatatcccttccacaaaaaacagtatttccatattattttatt 9307555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 127 - 224
Target Start/End: Complemental strand, 20657645 - 20657545
Alignment:
Q  127 cacaaaaaacagtatttccatgttattttatt---ttattaatataagttactcttccttagcctttgatcaggtgtaacaaacgtgagcaaaaaataat 223  Q
    ||||||||||||||||||||| ||||||||||   |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  20657645 cacaaaaaacagtatttccatattattttattgttttattaatataagttactcttccttagcctttgatcaattgtaacaaacgtgagcaaaaaataat 20657546  T
Q  224 a 224  Q
    |    
T  20657545 a 20657545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 126
Target Start/End: Original strand, 9329789 - 9329906
Alignment:
Q  9 aaactagcacaaaacaaaaactcatgttacttttttatcagcctcttttatgttgtacatatgtgttgttcccctcattacaaccgacgaagattgccaa 108  Q
    |||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||||| ||||||||| |||||| |||||||||  |||||||||||    
T  9329789 aaactagcacaaaataaaaactcatgttacttttttatcagccgtttttatgttgtacatttgtgttgtttccctcaatacaaccgataaagattgccaa 9329888  T
Q  109 gtgttttcacatccctta 126  Q
     | | |||| ||||||||    
T  9329889 atatattcatatccctta 9329906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 9 - 158
Target Start/End: Original strand, 47221099 - 47221243
Alignment:
Q  9 aaactagcacaaaacaaaaactcatgttacttttttatcagcctcttttatgttgtacatatgtgttgttcccctcattacaaccgacgaagattgccaa 108  Q
    |||||||||||||| |||| ||||||||||||||| |||||||  ||||||||||||||| ||||||||     ||| |||||||||| |||||| ||||    
T  47221099 aaactagcacaaaa-aaaacctcatgttactttttaatcagccaattttatgttgtacatctgtgttgt-----tcaatacaaccgacaaagattaccaa 47221192  T
Q  109 gtgttttcacatcccttacac-aaaaaacagtatttccatgttattttatt 158  Q
     | |||||| ||||||| ||| ||||||| |||||||||| ||||||||||    
T  47221193 atattttcatatcccttccacaaaaaaaccgtatttccatattattttatt 47221243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 9306731 - 9306798
Alignment:
Q  1 ctcacaagaaactagcacaaaacaaaaactcatgttacttttttatcagcctcttttatgttgtacat 68  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  9306731 ctcacaaaaaattagcacaaaacaaaaactcatgttacttttttatcagccgcttttatgttgtacat 9306798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 130 - 223
Target Start/End: Original strand, 47221249 - 47221346
Alignment:
Q  130 aaaaaacagtatttccatgttatttt----attttattaatataagttactcttccttagcctttgatcaggtgtaacaaacgtgagcaaaaaataat 223  Q
    |||||||||||||||||| ||| |||    |||||||||||||||||||||||||||||| |||||||||  ||||| |||| |||||||||||||||    
T  47221249 aaaaaacagtatttccattttaattttattattttattaatataagttactcttccttagtctttgatcaattgtaaaaaacttgagcaaaaaataat 47221346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 9302293 - 9302360
Alignment:
Q  1 ctcacaagaaactagcacaaaacaaaaactcatgttacttttttatcagcctcttttatgttgtacat 68  Q
    ||||||| ||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  9302293 ctcacaaaaaattagaacaaaacaaaaactcatgttacttttttatcagccgcttttatgttgtacat 9302360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 154 - 223
Target Start/End: Complemental strand, 41755244 - 41755175
Alignment:
Q  154 ttattttattaatataagttactcttccttagcctttgatcaggtgtaacaaacgtgagcaaaaaataat 223  Q
    |||||||||||||||||||||||||| |||||||||||||||  |||| |||||||||||||||| ||||    
T  41755244 ttattttattaatataagttactctttcttagcctttgatcaattgtagcaaacgtgagcaaaaagtaat 41755175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 165 - 229
Target Start/End: Complemental strand, 9302009 - 9301945
Alignment:
Q  165 atataagttactcttccttagcctttgatcaggtgtaacaaacgtgagcaaaaaataataataaa 229  Q
    |||||||||||||||||||| ||||||||||  ||||||||||||||| |||||||||| |||||    
T  9302009 atataagttactcttccttaacctttgatcaattgtaacaaacgtgaggaaaaaataatgataaa 9301945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 165 - 229
Target Start/End: Complemental strand, 9306447 - 9306383
Alignment:
Q  165 atataagttactcttccttagcctttgatcaggtgtaacaaacgtgagcaaaaaataataataaa 229  Q
    |||||||||||||||||||| ||||||||||  ||||||||||||||| |||||||||| |||||    
T  9306447 atataagttactcttccttaacctttgatcaattgtaacaaacgtgaggaaaaaataatgataaa 9306383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 11321254 - 11321188
Alignment:
Q  9 aaactagcacaaaacaaaaactcatgttacttttttatcagcctcttttatgttgtacatatgtgtt 75  Q
    |||||||||||||| |||||  |||||||||||||||| |||| |||||||||||||||| ||||||    
T  11321254 aaactagcacaaaataaaaatccatgttacttttttataagccacttttatgttgtacatctgtgtt 11321188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 167 - 223
Target Start/End: Complemental strand, 20618288 - 20618232
Alignment:
Q  167 ataagttactcttccttagcctttgatcaggtgtaacaaacgtgagcaaaaaataat 223  Q
    |||||||||||||||||||||||||||||  ||||||||||| ||||| ||||||||    
T  20618288 ataagttactcttccttagcctttgatcaattgtaacaaacgagagcagaaaataat 20618232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 41755418 - 41755371
Alignment:
Q  1 ctcacaagaaactagcacaaaacaaaaactcatgttacttttttatca 48  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||    
T  41755418 ctcacaaaaaactagcacaaaataaaaactcatgttacttttttatca 41755371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 9302384 - 9302432
Alignment:
Q  61 ttgtacatatgtgttgttcccctcattacaaccgacgaagattgccaag 109  Q
    |||||||| ||||||||| |||||| |||||||||| ||||||||||||    
T  9302384 ttgtacatctgtgttgttgccctcaatacaaccgacaaagattgccaag 9302432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 223
Target Start/End: Original strand, 9329902 - 9329945
Alignment:
Q  180 ccttagcctttgatcaggtgtaacaaacgtgagcaaaaaataat 223  Q
    ||||||||||||||||  ||||| ||||||||||||||||||||    
T  9329902 ccttagcctttgatcaattgtaataaacgtgagcaaaaaataat 9329945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 101; Significance: 4e-50; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 2 - 158
Target Start/End: Original strand, 237266 - 237422
Alignment:
Q  2 tcacaagaaactagcacaaaacaaaaactcatgttacttttttatcagcctcttttatgttgtacatatgtgttgttcccctcattacaaccgacgaaga 101  Q
    |||||| ||||||||||||||||||||||||| |||||||||||| ||||  ||||||||||||||| |||||||||||||||| |||||||||| ||||    
T  237266 tcacaaaaaactagcacaaaacaaaaactcatattacttttttataagccgattttatgttgtacatctgtgttgttcccctcaatacaaccgacaaaga 237365  T
Q  102 ttgccaagtgttttcacatcccttacacaaaaaacagtatttccatgttattttatt 158  Q
    ||||||| | |||||| ||||||| ||||||||||| ||||||||| ||||||||||    
T  237366 ttgccaaatattttcatatcccttccacaaaaaacaatatttccatattattttatt 237422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 54 - 223
Target Start/End: Complemental strand, 29699076 - 29698912
Alignment:
Q  54 ttttatgttgtacatatgtgttgttcccctcattacaaccgacgaagattgccaagtgttttcacatcccttacacaaaaaacagtatttccatgttatt 153  Q
    |||||||||| |||| |||||||||||||||| |||||||||| |||||| |||||| |||||| ||||||| |||||||||||||||||||     ||     
T  29699076 ttttatgttggacatctgtgttgttcccctcaatacaaccgacaaagatttccaagtattttcatatcccttccacaaaaaacagtatttcc-----ata 29698982  T
Q  154 ttattttattaatataagttactcttccttagcctttgatcaggtgtaacaaacgtgagcaaaaaataat 223  Q
    ||||||||||| ||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||    
T  29698981 ttattttattagtataagttactcttcgttagcctttgatcaattgtaacaaacgtgagcaaaaaataat 29698912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 14494883 - 14495040
Alignment:
Q  1 ctcacaagaaactagcacaaaacaaaaactcatgttacttttttatcagcctcttttatgttgtacatatgtgttgttcccctcattacaaccgacgaag 100  Q
    ||||||| ||||||||||||||||||||  |||||||||||| || |||||  ||||||||||| | | ||||||| |||||||| |||||||||| |||    
T  14494883 ctcacaaaaaactagcacaaaacaaaaatccatgttacttttctaacagccgattttatgttgtgcgtctgtgttgctcccctcaatacaaccgacaaag 14494982  T
Q  101 attgccaagtgttttcacatcccttacacaaaaaacagtatttccatgttattttatt 158  Q
    |||||||||| |||||| ||||||| ||||||||||| ||||||||| ||||||||||    
T  14494983 attgccaagtattttcatatcccttccacaaaaaacaatatttccatattattttatt 14495040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 14245973 - 14246150
Alignment:
Q  1 ctcacaagaaactagcacaaaacaaaaactcatgttacttttttatcagcctcttttatgttgtacatatgtgttgttcccctcattacaaccgacgaag 100  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||| || ||||| |||||||||||||||| ||||||| || |||    
T  14245973 ctcacaaaaaattagcacaaaacaaaaactcatgttacttttttatcagccgcttttatattatacatctgtgttgttcccctcaatacaaccaacaaag 14246072  T
Q  101 attgccaagtgttttcacatcccttacacaaaaaacagtatttccatgttattttattttattaatataagttactcttcctta 184  Q
    |||||||||| |||||| |||  || || |||||| | |||||||     || ||||||||||||| |||||||||||||||||    
T  14246073 attgccaagtattttcatatctattcca-aaaaaaaaatatttcc-----atattattttattaatgtaagttactcttcctta 14246150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 60 - 219
Target Start/End: Complemental strand, 43575111 - 43574945
Alignment:
Q  60 gttgtacatatgtgttgttcccctcattacaaccgacgaagattgccaagtgttttcacatcccttacacaaaaaacagtatttccatgttattttatt- 158  Q
    ||||||||| |||||||||| ||||| |||||||||| ||||||||||||| |||| | |||||||||| |||||| ||||||||||| ||||||||||     
T  43575111 gttgtacatctgtgttgttctcctcaatacaaccgacaaagattgccaagtattttaatatcccttacaaaaaaaa-agtatttccatattattttatta 43575013  T
Q  159 -------ttattaatataagttactcttccttagcctttgatcaggtgtaacaaacgtgagcaaaaaa 219  Q
           |||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||||    
T  43575012 tttaattttattaatataagttactcttccttagcctttgatcaattgtaacaaacgtgagaaaaaaa 43574945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 24 - 158
Target Start/End: Complemental strand, 20133018 - 20132881
Alignment:
Q  24 aaaaactcatgttacttttttatcagcctcttttatgttgtacatatgtgttgttcccctcatt---acaaccgacgaagattgccaagtgttttcacat 120  Q
    ||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||||| || |   ||||||||| ||||||||||||| |||||| ||    
T  20133018 aaaaactcatgttacttttttatcagccgattttatgttgtacatgtgtgttgttccccacaatacaacaaccgacaaagattgccaagtattttcatat 20132919  T
Q  121 cccttacacaaaaaacagtatttccatgttattttatt 158  Q
    |||||  |||||||| | ||||||||| ||||||||||    
T  20132918 cccttctacaaaaaataatatttccatattattttatt 20132881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 54 - 223
Target Start/End: Original strand, 8528295 - 8528463
Alignment:
Q  54 ttttatgttgtacatatgtgttgttcccctcattacaaccgacgaagattgccaagtgttttcacatcccttacacaaaaaaca----gtatttccatgt 149  Q
    |||||| |||||||| | |||||||||||||| |||||||||| ||||||| ||||| |||||| ||||||| ||||||||| |    |||||| ||| |    
T  8528295 ttttattttgtacatctatgttgttcccctcaatacaaccgacaaagattgtcaagtattttcatatcccttccacaaaaaaaaaaaagtattttcatat 8528394  T
Q  150 tattttattttattaatataagttactcttccttagcctttgatcaggtgtaacaaacgtgagcaaaaaataat 223  Q
    |||     |||||||||||||||||||||||| |||||||||||||  |||||||||||| | |||||||||||    
T  8528395 tat-----tttattaatataagttactcttccatagcctttgatcaattgtaacaaacgtaaacaaaaaataat 8528463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 9041314 - 9041466
Alignment:
Q  1 ctcacaagaaactagcacaaaacaaaaactcatgttactttttt-atcagcctcttttatgttgtacatatgtgttgttcccctcattacaaccgacgaa 99  Q
    ||||||| ||||||||| |||||||||||||||||||||||||| || || |  ||||||||||||||| | |||||||||||||| ||||| |||| ||    
T  9041314 ctcacaaaaaactagcataaaacaaaaactcatgttactttttttattagtcgattttatgttgtacatctatgttgttcccctcaatacaatcgacaaa 9041413  T
Q  100 gattgccaagtgttttcacatcccttacacaaaaaacagtatttccatgttattt 154  Q
    ||||| ||||| |||||| |||||||  | |||||||||||||| ||| ||||||    
T  9041414 gattgtcaagtattttcatatccctt--aaaaaaaacagtattttcatattattt 9041466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 127 - 223
Target Start/End: Original strand, 14495046 - 14495137
Alignment:
Q  127 cacaaaaaacagtatttccatgttattttattttattaatataagttactcttccttagcctttgatcaggtgtaacaaacgtgagcaaaaaataat 223  Q
    ||||||||||||||||||     ||| |||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||||    
T  14495046 cacaaaaaacagtatttc-----tatattattttattaatataagttactctttcttagcctttgatcaattgtaacaaacgtgagcaaaaaataat 14495137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 149 - 214
Target Start/End: Original strand, 50231826 - 50231891
Alignment:
Q  149 ttattttattttattaatataagttactcttccttagcctttgatcaggtgtaacaaacgtgagca 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  50231826 ttattttattttattaatataagttactcttccttagcctttgatcaattgtaacaaacgtgagca 50231891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 75 - 168
Target Start/End: Complemental strand, 9046230 - 9046137
Alignment:
Q  75 tgttcccctcattacaaccgacgaagattgccaagtgttttcacatcccttacacaaaaaacagtatttccatgttattttattttattaatat 168  Q
    ||||||||||| ||||||||   ||||||||||||| |||||| |||| |||||||||||||| ||||||||| ||||||||| ||||||||||    
T  9046230 tgttcccctcaatacaaccgggaaagattgccaagtattttcatatcctttacacaaaaaacactatttccatattattttatcttattaatat 9046137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 127 - 223
Target Start/End: Complemental strand, 20132875 - 20132777
Alignment:
Q  127 cacaaaaaacagtatttccatgttattttatt---ttattaatataagttactcttccttagcctttgatcaggtgtaacaaacgtgagcaaaaaataat 223  Q
    |||||||||||||||||||||  |||||||||   |||||||||||||||||||||||||| ||||| ||||   |||||||||||||||||||||||||    
T  20132875 cacaaaaaacagtatttccatactattttattattttattaatataagttactcttccttaaccttt-atcaatagtaacaaacgtgagcaaaaaataat 20132777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 58 - 158
Target Start/End: Original strand, 49266117 - 49266217
Alignment:
Q  58 atgttgtacatatgtgttgttcccctcattacaaccgacgaagattgccaagtgttttcacatcccttacacaaaaaacagtatttccatgttattttat 157  Q
    ||||||||||| |||||||||||||||| ||||| |||  ||||||||||||| |||||| |||||||| |||||||||| ||| || || |||||||||    
T  49266117 atgttgtacatctgtgttgttcccctcaatacaatcgataaagattgccaagtattttcatatcccttatacaaaaaacattatctctatattattttat 49266216  T
Q  158 t 158  Q
    |    
T  49266217 t 49266217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 50231626 - 50231692
Alignment:
Q  9 aaactagcacaaaacaaaaactcatgttacttttttatcagcctcttttatgttgtacatatgtgtt 75  Q
    |||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||    
T  50231626 aaactaacacaaaacaaaaactcatattacttttttatcagccgcttttatgttgtacatctgtgtt 50231692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 29699157 - 29699077
Alignment:
Q  9 aaactagcacaaaacaaaaactcatgttacttttttatcagcctcttttatgttgtacatatgtgttgttcccctcattaca 90  Q
    ||||||||||||||||||||||||||||| |||||||| || |  ||||||||||||||| |||||||||||||||| ||||    
T  29699157 aaactagcacaaaacaaaaactcatgttatttttttattag-cgattttatgttgtacatctgtgttgttcccctcaataca 29699077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 154 - 221
Target Start/End: Original strand, 49266238 - 49266305
Alignment:
Q  154 ttattttattaatataagttactcttccttagcctttgatcaggtgtaacaaacgtgagcaaaaaata 221  Q
    |||||||||||||| || ||||||||||||||||||||||||  ||||||||| ||||||||||||||    
T  49266238 ttattttattaatacaaattactcttccttagcctttgatcaattgtaacaaaagtgagcaaaaaata 49266305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 43575188 - 43575131
Alignment:
Q  4 acaagaaactagcacaaaacaaaaactcatgttacttttttatcagcctcttttatgt 61  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  43575188 acaaaaaactaacacaaaacaaaaactcatgttacttttttatcagccgcttttatgt 43575131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 58 - 158
Target Start/End: Original strand, 50231706 - 50231805
Alignment:
Q  58 atgttgtacatatgtgttgttcccctcattacaaccgacgaagattgccaagtgttttcacatcccttacacaaaaaacagtatttccatgttattttat 157  Q
    ||||||||||| ||| |||||||| ||| |||||||||| ||||||||||||| |||||| ||| ||| |||| |||||| ||||| ||| |||||||||    
T  50231706 atgttgtacatctgtattgttccc-tcaatacaaccgacaaagattgccaagtattttcatatctcttgcacagaaaacaatattttcatattattttat 50231804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 237459 - 237514
Alignment:
Q  168 taagttactcttccttagcctttgatcaggtgtaacaaacgtgagcaaaaaataat 223  Q
    ||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||    
T  237459 taagttacttttccttagcctttgatcaattgtaacaaacgtgagcaaaaaataat 237514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 9046322 - 9046263
Alignment:
Q  16 cacaaaacaaaaactcatgttacttttttatcagcctcttttatgttgtacatatgtgtt 75  Q
    ||||||| ||||||||||||||||||| |||||||| |||||||||||||||| ||||||    
T  9046322 cacaaaataaaaactcatgttacttttctatcagccgcttttatgttgtacatctgtgtt 9046263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 218
Target Start/End: Original strand, 23997698 - 23997762
Alignment:
Q  154 ttattttattaatataagttactcttccttagcctttgatcaggtgtaacaaacgtgagcaaaaa 218  Q
    ||||||||||||||||||||||||||||  | ||||||||||  | |||||||||||||||||||    
T  23997698 ttattttattaatataagttactcttccgaaacctttgatcaattataacaaacgtgagcaaaaa 23997762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 80 - 158
Target Start/End: Original strand, 23997592 - 23997670
Alignment:
Q  80 ccctcattacaaccgacgaagattgccaagtgttttcacatcccttacacaaaaaacagtatttccatgttattttatt 158  Q
    |||||| |||||||||| ||||||||||| | |||||| |  |||| ||||||| ||||||||||||| ||||||||||    
T  23997592 ccctcaatacaaccgacaaagattgccaactattttcatacgccttccacaaaagacagtatttccatattattttatt 23997670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 184
Target Start/End: Complemental strand, 9046134 - 9046099
Alignment:
Q  149 ttattttattttattaatataagttactcttcctta 184  Q
    ||||| ||||||||||||||||||||||||||||||    
T  9046134 ttattatattttattaatataagttactcttcctta 9046099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 9 - 158
Target Start/End: Complemental strand, 3469 - 3319
Alignment:
Q  9 aaactagcacaaaacaaaaactcatgttacttttttatcagcctcttttatgttgtacatatgtgttgttcccctcattacaaccgacgaaga-ttgcca 107  Q
    ||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||| ||||||||||| |||| |||||||||| |||| ||||||    
T  3469 aaactagcacaaaacaaaaactcatgttagttttttatcagccgattttatgttgtacatctgtgttgttccgctcaatacaaccgacaaagatttgcca 3370  T
Q  108 agtgttttcacatcccttacacaaaaaacagtatttccatgttattttatt 158  Q
    |||||||||| ||| ||| ||||||||||||||||| ||| ||||||||||    
T  3369 agtgttttcatatctcttccacaaaaaacagtattttcatattattttatt 3319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 127 - 223
Target Start/End: Complemental strand, 3313 - 3214
Alignment:
Q  127 cacaaaaaacagtatttccatgttattttatt---ttattaatataagttactcttccttagcctttgatcaggtgtaacaaacgtgagcaaaaaataat 223  Q
    ||||||||||||||||||||| ||||||||||   |||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||    
T  3313 cacaaaaaacagtatttccatattattttattattttattaatataagttactcttccttagcctttgatcaattgtaacagacgtgagcaaaaaataat 3214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 92; Significance: 8e-45; HSPs: 2)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 3 - 158
Target Start/End: Complemental strand, 17215 - 17060
Alignment:
Q  3 cacaagaaactagcacaaaacaaaaactcatgttacttttttatcagcctcttttatgttgtacatatgtgttgttcccctcattacaaccgacgaagat 102  Q
    ||||| |||||| ||||||||||||| |||||||||||||||||  |||  |||||||||||||||||||||||||||||| | |||||||||| |||||    
T  17215 cacaaaaaactatcacaaaacaaaaattcatgttacttttttatatgccgattttatgttgtacatatgtgttgttcccctgaatacaaccgacaaagat 17116  T
Q  103 tgccaagtgttttcacatcccttacacaaaaaacagtatttccatgttattttatt 158  Q
    | |||||| |||||| ||||||| |||||||||||||||||| || ||||||||||    
T  17115 ttccaagtattttcatatcccttccacaaaaaacagtatttcgatattattttatt 17060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 127 - 229
Target Start/End: Complemental strand, 17054 - 16954
Alignment:
Q  127 cacaaaaaacagtatttccatgttattttattttattaatataagttactcttccttagcctttgatcaggtgtaacaaacgtgagcaaaaaataataat 226  Q
    ||||||||||||||||||||| |||||||||| | ||| ||  ||||| |||| |||| | ||||||||  ||||||||||||||||||||||||||| |    
T  17054 cacaaaaaacagtatttccatattattttattattttatta--agttattctttcttaacttttgatcaattgtaacaaacgtgagcaaaaaataatagt 16957  T
Q  227 aaa 229  Q
    |||    
T  16956 aaa 16954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 28 - 158
Target Start/End: Original strand, 56614 - 56744
Alignment:
Q  28 actcatgttacttttttatcagcctcttttatgttgtacatatgtgttgttcccctcattacaaccgacgaagattgccaagtgttttcacatcccttac 127  Q
    |||||||||||||||||||||||| |||||||| ||||||| ||||||||||||| || |||||||| | ||||||||||||| |||||| ||| ||| |    
T  56614 actcatgttacttttttatcagccacttttatgctgtacatctgtgttgttccccccaatacaaccggcaaagattgccaagtattttcatatctcttcc 56713  T
Q  128 acaaaaaacagtatttccatgttattttatt 158  Q
    ||||||||||||||||| || ||||||||||    
T  56714 acaaaaaacagtatttcaatattattttatt 56744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 56556 - 56596
Alignment:
Q  1 ctcacaagaaactagcacaaaacaaaaactcatgttacttt 41  Q
    ||||||| |||||||||||||||||||| ||||||||||||    
T  56556 ctcacaaaaaactagcacaaaacaaaaaatcatgttacttt 56596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0990 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0990
Description:

Target: scaffold0990; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 1049 - 1116
Alignment:
Q  1 ctcacaagaaactagcacaaaacaaaaactcatgttacttttttatcagcctcttttatgttgtacat 68  Q
    ||||||| ||| |||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||    
T  1049 ctcacaaaaaaatagcacaaaacaaaaacttatgttacttttttattagccgcttttatgttgtacat 1116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University