View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8697_low_3 (Length: 400)
Name: NF8697_low_3
Description: NF8697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8697_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Original strand, 4477736 - 4478125
Alignment:
| Q |
1 |
acatgtttttccatttcataataataaaaaataagaaaataatgatatcctggccaaagcagcaaaaaagtttacatatatgtaaaattgtagtacaatt |
100 |
Q |
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| T |
4477736 |
acatgtttttccatttcataataataaaaaataaaaaaattatgatatcctggccaaagcagcaaaaaagtttacatatatgtaaaattgtagtagaatt |
4477835 |
T |
|
| Q |
101 |
gtgttagtaacaacacgttatagaagtatgaatatcaaagtgtaagagttgggattttctcagtcttgcaatcttcgtcgacacctatatagtaaaatct |
200 |
Q |
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| T |
4477836 |
gtgttagtaacaacacgttatagaagtatgaatatcaaagtgtaaaagttgggattttcttagtcttgcaatcttcgtcgacacctagatagtaaaatct |
4477935 |
T |
|
| Q |
201 |
atataattcaacagcagatcaccaaatggtgaatatgtaaaatctaattaagtgattttatacaaccaaaaaatctctcaacccactacgtgtagaagta |
300 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
4477936 |
atataattcaacagcagatcaccaaatggtgaatatgcaaaatctaattaagtgattttatacatccaaaaaatctctcaacccactacgtgtagaagta |
4478035 |
T |
|
| Q |
301 |
aaaatatatatttatgagctataatttcaacgtatattcataattcttagttcaaaacttgtaaatcaagctatcgatggttcatctcac |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4478036 |
aaaatatatatttatgagctataatttcaacgtatattcataattcttagttcaaaacttgtaaatcaagctatcgatggttcatctcac |
4478125 |
T |
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