View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8697_low_4 (Length: 389)
Name: NF8697_low_4
Description: NF8697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8697_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 155; Significance: 3e-82; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 133 - 314
Target Start/End: Complemental strand, 37988186 - 37988002
Alignment:
| Q |
133 |
tattaaatatgaatcaactctttatcaaatgacaacaattattatatagtattaccgctagtactgtactggtttgagtgttttccaattattgtctgtc |
232 |
Q |
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| T |
37988186 |
tattaaatatgaacgaactctttatcaaatgacaacaattattatatactattaccgctagtactgtactggtttgagtgttttccaattattgtctgtc |
37988087 |
T |
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| Q |
233 |
gacattactttcaaatcacctcatgaa---tcattaagtgctattttggataaagatgtgtttgaaattctcaacataaatatta |
314 |
Q |
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| T |
37988086 |
gacattactttcaaatcacctcatgaatcatcattaattgctattttggataaagatgtgtttgaaattctcaacataaatatta |
37988002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 37988720 - 37988586
Alignment:
| Q |
1 |
aaatatcacttttcaatgttcaactaccgtgattttggtgaagctcaagat-agtagttttggccaaaacgtgcgtctatgtttaatgcaccgcagaaac |
99 |
Q |
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| T |
37988720 |
aaatatcacttttcaatgttcaactaccgtgattttggtgaagctcaagattagtagctttggtcaaaacatgcgtctacgtttaatgcaccgcataaac |
37988621 |
T |
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| Q |
100 |
aaatagaacaacttaaagttgaactcgtgttatta |
134 |
Q |
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| T |
37988620 |
aaatagaacaacttaaagttgaactcgtgttatta |
37988586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 313 - 370
Target Start/End: Complemental strand, 37987738 - 37987682
Alignment:
| Q |
313 |
taaatatcaagcaactagtctacgcacctcaatctcactatctcttttactttacaat |
370 |
Q |
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| T |
37987738 |
taaatatcaagcaactagtctacgcacct-gatctcactatctcttttactttacaat |
37987682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 48949243 - 48949150
Alignment:
| Q |
1 |
aaatatcacttttcaatgttcaactaccgtgattttggtgaagctcaagatagtagttttggccaaaacgtgcgtctatgtttaatgcaccgca |
94 |
Q |
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| T |
48949243 |
aaatatcacatcccaatgctcaactaccgtgatttttaagaagctcaaaatagtggctttgggcagaacgtgcgtctatgcttagtgcaccgca |
48949150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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