View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8697_low_6 (Length: 355)
Name: NF8697_low_6
Description: NF8697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8697_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 37326081 - 37325741
Alignment:
| Q |
1 |
aatcaatagaaaatcatgaaccgatgatgaactaagttttcatcacaaccctatactatattatgtgcaagataaaatggacacatta--catcccacac |
98 |
Q |
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| T |
37326081 |
aatcaatagaaaaccatgaaccgatgatgaactaagttttcatcacaaccctatactatattatgtgcaagataaaatggacacattatacatcccacac |
37325982 |
T |
|
| Q |
99 |
attaagctaggtgacgatcttcttgcatgcgattttgaaacggtgaaatcctttttggagggaagacttgagcttaccttgagctgcataaagcttgtat |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
37325981 |
attaagctaggtgacgatcttcttgcatgcgattttgaaacggtgatatcctttttggagggaagacttgagcttaccttgagctgcataaagcctgtat |
37325882 |
T |
|
| Q |
199 |
gtggccactctacgttttctcttcgaatccttatcattccaccacaacgattggggaaacggattgcttacgatccctacacgatttcgcggaggagaag |
298 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37325881 |
gtggccaccctacgttttctcttcgaatccttatcattccaccacaacgattggggaaacggattgcttacgatccctacacgatttcgcggaggagaag |
37325782 |
T |
|
| Q |
299 |
gttcataattagaataacaagaagtagaggtattgtccctg |
339 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
37325781 |
gttcataattagaataacaagaagtagaggtattgtccctg |
37325741 |
T |
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