View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8697_low_8 (Length: 287)
Name: NF8697_low_8
Description: NF8697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8697_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 28195328 - 28195046
Alignment:
| Q |
1 |
atctaatattggatagccttacttgtaggtaaaatcaatttaaaatgacatatttcctccggtcctatataaaaagaaaattgggtcaataaaagttgat |
100 |
Q |
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| T |
28195328 |
atctaatattggatagccgtacttgtaggtaaaatcaatttaaaatgacatatttcctccggtcctatataaaaagaaaattgggtcaataaaagttgat |
28195229 |
T |
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| Q |
101 |
gtatatgaccggagtgagtgatattaaatgaatgataggtgca---------------tatgttaccagggtgtttgccattatttatttgtatcttatt |
185 |
Q |
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| T |
28195228 |
gtatatgaccggagtgagtgatattaaatgaatgataggtgcatacccaacaaaacactagattaccagggtgtttgccattatttatttgtatcttatt |
28195129 |
T |
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| Q |
186 |
attgatttgaattgcatgtggattttgtagtctgtgactgaggctctggagacgaaagttaagagcaaggtttctatcaaggt |
268 |
Q |
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| T |
28195128 |
attgatttgaattgcatgtggattttgtagtctgtgactgaggctctggagacgaaagttaagagcaaggtttctatcaaggt |
28195046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 104
Target Start/End: Original strand, 40138812 - 40138844
Alignment:
| Q |
72 |
aaaagaaaattgggtcaataaaagttgatgtat |
104 |
Q |
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| T |
40138812 |
aaaagaaaattgggttaataaaagttgatgtat |
40138844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 190 - 268
Target Start/End: Complemental strand, 162709 - 162631
Alignment:
| Q |
190 |
atttgaattgcatgtggattttgtagtctgtgactgaggctctggagacgaaagttaagagcaaggtttctatcaaggt |
268 |
Q |
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| T |
162709 |
attttaattgcatgtggattttgtagtctatgactgaagctctggaaacacaagttaaaagcaaggtctctatcaaggt |
162631 |
T |
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