View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8698_high_10 (Length: 224)
Name: NF8698_high_10
Description: NF8698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8698_high_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 14 - 81
Target Start/End: Complemental strand, 52610685 - 52610618
Alignment:
| Q |
14 |
cagcacagagtacaaacttttataacatatgagatttcaacatgtgtggctaatgccaataacaacat |
81 |
Q |
| |
|
||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52610685 |
cagcatagagtgcaaacttttataacagatgagatttcaacatgtgtggctaatgccaataacaacat |
52610618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 23881376 - 23881429
Alignment:
| Q |
14 |
cagcacagagtacaaacttttataacatatgagatttcaacatgtgtggctaat |
67 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
23881376 |
cagcatagagtacaaacttttataacagatgagatttcaacatgtgtggctaat |
23881429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 31331003 - 31330946
Alignment:
| Q |
24 |
tacaaacttttataacatatgagatttcaacatgtgtggctaatgccaataacaacat |
81 |
Q |
| |
|
|||||| |||||||||| ||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
31331003 |
tacaaatttttataacagatggaatttcaacacatgtggctaatgccaataacaacat |
31330946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University