View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8698_high_4 (Length: 341)
Name: NF8698_high_4
Description: NF8698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8698_high_4 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 4 - 341
Target Start/End: Complemental strand, 26101677 - 26101339
Alignment:
| Q |
4 |
taaattggcatagaacagacttgatagatgtgtgtgcatttgatcaggcagaataagtttccatatttccccatgattgtttagctaattcactaaagaa |
103 |
Q |
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| T |
26101677 |
taaattggcctagaacagacttgacagatgtgtgtgcatttgatcaggcagaataagtttccacatttccccatgattgtttagctaattcactaaagaa |
26101578 |
T |
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| Q |
104 |
ggttgtgaagatatgtttcacaattagctacgcataactaatttgaaaatgacgttggaatgcagcgcataagc-aaattcaagttcaaacatcaaacat |
202 |
Q |
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| T |
26101577 |
ggttgtgaagatatgttgcacaattagctacgcataactaatttgaaaatgacgttggaatgtagcgcataagcaaaattcaagttcaaacatcaaacag |
26101478 |
T |
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| Q |
203 |
aaccgggcttcagcacaagaactgcgcagcaagttgtttgacaacaatatttcgggcagaaacaatctatggatatcagcattattgtcatgattatcca |
302 |
Q |
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| T |
26101477 |
aaccgggcttcggcacaagaactgcgcagcaagttgtttgacaacaatatttcgggcagaaacaatctatggatatcagcattattgtcatgattatcca |
26101378 |
T |
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| Q |
303 |
cattattgtaaagttccacaagcacattatgagctgatc |
341 |
Q |
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| T |
26101377 |
cattattgtaaagtttcacaagcacattatgagctgatc |
26101339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 4 - 141
Target Start/End: Complemental strand, 42828232 - 42828094
Alignment:
| Q |
4 |
taaattggcatagaacagacttgatagatgtgtgtg-catttgatcaggcagaataagtttccatatttccccatgattgtttagctaattcactaaaga |
102 |
Q |
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||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| | |
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| T |
42828232 |
taaattggcctagaacagacttgacagatgtgtgtggcatttgatcaggcagaataagtttccacatttctccatgattgtttagctaattcactaaata |
42828133 |
T |
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| Q |
103 |
aggttgtgaagatatgtttcacaattagctacgcataac |
141 |
Q |
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| T |
42828132 |
agattgtgaagatatgttgcacaattttctatgcataac |
42828094 |
T |
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