View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8698_low_1 (Length: 613)
Name: NF8698_low_1
Description: NF8698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8698_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 124; Significance: 2e-63; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 2 - 190
Target Start/End: Original strand, 3010625 - 3010817
Alignment:
| Q |
2 |
ccagcctcgctaatgagacacaaaaaacgcagcacaaataaacggtgtcagcagaacacac----accttgcaaaaacgaccagataaaaattgcagcaa |
97 |
Q |
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| T |
3010625 |
ccagcctcgctaatgagacagaaaaaacgcagcaaaactaaacggtctcagcagaacacacgtacaccttgcaaaaacaaccaaataaaaattgcagcaa |
3010724 |
T |
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| Q |
98 |
cacaacacccatcatcaactgactaagactgagcacgccccaacgataaccagataaccaataccccgcagaacagaaccaaacctaccgaaa |
190 |
Q |
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| T |
3010725 |
cacaacacctctcatcagcggactaagactgagcacgccccaacgataaccagataaccaataccccgcagagcagaaccagacctactgaaa |
3010817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 5 - 212
Target Start/End: Original strand, 3002246 - 3002453
Alignment:
| Q |
5 |
gcctcgctaatgagacacaaaaaacgcagcacaaataaacggtgtcagcagaacacacaccttgcaaaaacgaccagataaaaattgcagcaacacaaca |
104 |
Q |
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| T |
3002246 |
gcctcgctaatgagaccgaaaaaacgcagcaaaactaaatggtctcagcaaaacacacaccttgaaaaaacaaccaaataaaaattgcagcaacacaaca |
3002345 |
T |
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| Q |
105 |
cccatcatcaactgactaagactgagcacgccccaacgataaccagataaccaataccccgcagaacagaaccaaacctaccgaaaaaaccaaccgctac |
204 |
Q |
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| T |
3002346 |
cctctcatcagctgactaaggctgagcacgccccgacgacaaccagaaaaccaataccccgcagagtagaaccagacctactgaaagtaccaacagctac |
3002445 |
T |
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| Q |
205 |
tgactatg |
212 |
Q |
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| T |
3002446 |
taactatg |
3002453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 403 - 457
Target Start/End: Original strand, 3011020 - 3011074
Alignment:
| Q |
403 |
attagtacgaaatgtttgaagacctattttgttacaaaaataaactatcagagta |
457 |
Q |
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| T |
3011020 |
attagtaggaaatgtttaaagatctattttgttacaaaaataaactatcggagta |
3011074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 254 - 315
Target Start/End: Original strand, 3002656 - 3002717
Alignment:
| Q |
254 |
aattcaacatatgatttattttcccttctcctcaactgggttgtgaaaagttatatatgata |
315 |
Q |
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| T |
3002656 |
aattcaacatatgatttattttcaattctgctaaactgagttgtgaaaagctatatttgata |
3002717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 303
Target Start/End: Original strand, 3010919 - 3010968
Alignment:
| Q |
254 |
aattcaacatatgatttattttcccttctcctcaactgggttgtgaaaag |
303 |
Q |
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| T |
3010919 |
aattcaacatatgatttattttcaattctgctaaactgagttgtgaaaag |
3010968 |
T |
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