View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8698_low_3 (Length: 470)
Name: NF8698_low_3
Description: NF8698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8698_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 1 - 456
Target Start/End: Complemental strand, 42155271 - 42154817
Alignment:
| Q |
1 |
tgtagggaatgatgagagagtaaagagctcggtgcgggttgcagcgtgtgattacgtggagaatctgtcgaatggttcggctcttgaagtgttgccatca |
100 |
Q |
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| T |
42155271 |
tgtagggaatgatgagagagtaaagagctcggtgcgcgttgcagcgtgtgattacgtggagaatctgtcgaatggttcggctcttgaagtgttgccatca |
42155172 |
T |
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| Q |
101 |
gctaagaatggtgtgtggaaagtgaagttggtgattgatacaagacaactagaggagattttgtcagaacaggtgaatactggagctttgattgagaaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42155171 |
gctaagaatggtgtgtggaaagtgaagttggtgattgatacaagacaactagaggagattttgtcagaacaggtgaatactggagctttgattgagaaga |
42155072 |
T |
|
| Q |
201 |
tgaggatggctgcaactgcatattctattagtagccctacaaggagcaggaccatgagcacttggaaagtgggatggaagccaacatttttcagaacatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42155071 |
tgaggatggctgcaactgcatattctattagtagccctacaaggagcaggaccatgagcacttggaaagtgggatggaagccaacatttttcagaacatt |
42154972 |
T |
|
| Q |
301 |
cttggcgccggttagctctggaaaaattccaaaacgtactgtttctgttgatgatgctgcagaagggtcaaatttggatttgagttcttgttaagaaaag |
400 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42154971 |
cttgacgccggttagctctggaaaaattccaaaacgtactgtttctgttgatgatgctgcagaagggtcaaatttggatttgagttcttgttaagaaaag |
42154872 |
T |
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| Q |
401 |
gcttcacagttcatactcaagaatgaaattcatgagtatgttaaattgttaatttt |
456 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42154871 |
gcttca-agttcatactcaagaatgaaattcatgagtatgttaaattgttaatttt |
42154817 |
T |
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