View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8698_low_8 (Length: 242)
Name: NF8698_low_8
Description: NF8698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8698_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 26101384 - 26101162
Alignment:
| Q |
1 |
ttatccacattattgtaaagtttcacaagcacattatgagctgatcatattcaaggaatataatcaaatcatgcaatgatagataatgaagnnnnnnnct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
26101384 |
ttatccacattattgtaaagtttcacaagcacattatgagctgatcatattcaaggaatataatcaaatcatgcaatgatagataatgaagaaaaaaact |
26101285 |
T |
|
| Q |
101 |
tcacacatgaaaaaactaaaatggttgccatatgtcaagataaaaaatgttttccaaaaacaaccaccattccattttctttaaaattcgcaagtcaagt |
200 |
Q |
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| T |
26101284 |
tcaaacatgaaaatactaaaatggttgccatatgtcaagataaaaaatgtgttccaaaaacaaccaccattccattttctttaaaattcgcaagtcaagt |
26101185 |
T |
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| Q |
201 |
tgatatgcatgccttgctactgc |
223 |
Q |
| |
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|||||||||||| |||||||||| |
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| T |
26101184 |
tgatatgcatgcgttgctactgc |
26101162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 74 - 203
Target Start/End: Complemental strand, 42828089 - 42827960
Alignment:
| Q |
74 |
caatgatagataatgaagnnnnnnncttcacacatgaaaaaactaaaatggttgccatatgtcaagataaaaaatgttttccaaaaacaaccaccattcc |
173 |
Q |
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|||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42828089 |
caatgatagataatgaagaaaaaaacttcaaacatgaaaaaactaaagtggttgccatatgtcaagataaaaaatgttttccaaaaacaaccaccattcc |
42827990 |
T |
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| Q |
174 |
attttctttaaaattcgcaagtcaagttga |
203 |
Q |
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||||||||||||||| |||||||||||||| |
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| T |
42827989 |
attttctttaaaatttgcaagtcaagttga |
42827960 |
T |
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