View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8699_high_2 (Length: 301)
Name: NF8699_high_2
Description: NF8699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8699_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-144; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 35631893 - 35631603
Alignment:
| Q |
1 |
caaaaaattacagctaagtttgtatctggtaatttcactccttttcaatttcatcattcatcatcatcacactatcacgtagctggtcatttctcaacca |
100 |
Q |
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| T |
35631893 |
caaaaaattacagctaagtttttatctggtaatttcactccttttcaatttcatcattcatcatcatcacactatcacgtagctggtcatttctcaacca |
35631794 |
T |
|
| Q |
101 |
tttaatcaatcttaattaggatgagaccnnnnnnntgtttcaatttttacttataaaagaacaacattacaaaattttaagaaacgtaacaagaccaaga |
200 |
Q |
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| T |
35631793 |
cttaatcaatcttaattaggatgagaccaaaaaaatgtttcaatttttacttataaaagaacaacattacaaaattttaagaaacgtaacaagaccaaga |
35631694 |
T |
|
| Q |
201 |
tgaaggcaaaaacaaaaaccttgattccttcactactcacgtattgtcatgcatgcgtcatgttcctcccaattcctgtgacttgtctctg |
291 |
Q |
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| T |
35631693 |
tgaaggcaaaaacaaaaaccttgattccttcactactcacgtgttgtcatgcatgcgtcatgttcctcccaattcctgtgacttgtctctg |
35631603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 118
Target Start/End: Complemental strand, 35636590 - 35636509
Alignment:
| Q |
38 |
ctccttttcaatttcatcattcatcatcatcacactatcacgta-gctggtcatttctcaaccatttaatcaatcttaatta |
118 |
Q |
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| T |
35636590 |
ctccttttcaatttcatcattcaaaatcatcacactatcatgtacgctcttcttttcccaaccacttaatcaatctttatta |
35636509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 179
Target Start/End: Complemental strand, 35636503 - 35636460
Alignment:
| Q |
136 |
tgtttcaatttttacttataaaagaacaacattacaaaatttta |
179 |
Q |
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| T |
35636503 |
tgtttcaatttttacttataattgaacatcattacaaaatttta |
35636460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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