View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8699_high_6 (Length: 241)
Name: NF8699_high_6
Description: NF8699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8699_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 81 - 225
Target Start/End: Original strand, 50774648 - 50774792
Alignment:
| Q |
81 |
ctcatcatcatagtataaaattaaataattttgaaaaccaactcaattattgtacaaaactaaaatcattttttaatcaattttgatcatattctccatt |
180 |
Q |
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| T |
50774648 |
ctcatcatcatagtataaaactaaataattttgaaaaccaactcaattattgtacaaaactaaaatcactttttaatcaattttgatcatattctccatt |
50774747 |
T |
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| Q |
181 |
tgagtgctgaaactatcatttgcgcccataaaagcatattgattg |
225 |
Q |
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| T |
50774748 |
tgagtgctgaaaccatcatttgcgcccataaaagcatattgattg |
50774792 |
T |
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Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 50774518 - 50774586
Alignment:
| Q |
16 |
attattctacgttaaactatgttacatgtcaatcagactcatcatcaacgtcctcgtgagcttagctca |
84 |
Q |
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| T |
50774518 |
attattctacgttaaactatgttacatgtcaatcagactcatcatcatcgtcctcgtgagcttagctca |
50774586 |
T |
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