View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8699_low_1 (Length: 398)
Name: NF8699_low_1
Description: NF8699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8699_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 18 - 391
Target Start/End: Original strand, 26786656 - 26787029
Alignment:
| Q |
18 |
ccttcaatatcaaatatgatgcatacaagttgcaacactatccaacagtcaaaatatagtactccaattccaaataatcaactnnnnnnnntcacttctt |
117 |
Q |
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| T |
26786656 |
ccttcaatatcaaatatgatgcatacaagttacaacactatccaacagtcaaaatatagtactccaattccaaataatcaactaaaaaaaatcacttctt |
26786755 |
T |
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| Q |
118 |
taaacaaataagccagacttacttgcatcggttgtgaacaagtgtcatcgaattcctggactgacactcttccctcaagcaaacagtaggttcggcgatt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26786756 |
taaacaaataagccagacttacttgcatcggttgtgaacaagtgtcatcgaattcctggactgacactcttccctcaagcaaacagtaggttcggcgatt |
26786855 |
T |
|
| Q |
218 |
cgtcctaaaaatcaaaatagccagcaaaatattacattcagatataaacacaacagttaactacataaataaccagaaatgactctgtaattacctctct |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26786856 |
cgtcctaaaaatcaaaatagccagcaaaatattacattcagatataaacacaacagttaactacataaataaccagaaatgactctgtaattacctctct |
26786955 |
T |
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| Q |
318 |
ccaccggaaccgggtcagagcagaaaccacatactagacacctgaatatagcttccctgatttctagtataatc |
391 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
26786956 |
ccaccggaaccgggtcagagcagaaaccacatactagacacctgaatatagcttccctgatttctggtataatc |
26787029 |
T |
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