View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8699_low_3 (Length: 280)

Name: NF8699_low_3
Description: NF8699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8699_low_3
NF8699_low_3
[»] chr1 (16 HSPs)
chr1 (1-280)||(13085834-13086113)
chr1 (132-280)||(13271444-13271592)
chr1 (82-280)||(12964061-12964259)
chr1 (49-280)||(13081051-13081282)
chr1 (78-280)||(13244707-13244909)
chr1 (162-280)||(19279354-19279472)
chr1 (83-280)||(30368294-30368491)
chr1 (83-280)||(13070362-13070559)
chr1 (79-280)||(13065399-13065600)
chr1 (117-241)||(13094242-13094366)
chr1 (85-280)||(13100812-13101006)
chr1 (117-225)||(13129671-13129779)
chr1 (117-225)||(13161364-13161472)
chr1 (83-280)||(13204268-13204465)
chr1 (117-221)||(13010616-13010720)
chr1 (162-280)||(13007088-13007206)


Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 13085834 - 13086113
Alignment:
Q  1 tcattaaacacaaatggaaaataaaatgattgaacatatatcaataagcattcttaacttcacaaaactgataatgtttatatcaaattcatcttctact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  13085834 tcattaaacacaaatggaaaataaaatgattgaacatatatcaatgagcattcttaacttcaaaaaactgataatgtttatatcaaattcatcttttact 13085933  T
Q  101 aactttgactttgaatccatgttccatgcggagaacaatagaaactcttggagttacagaatgaccttccacaacttgtatgtgaaacttccataatata 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  13085934 aactttgactttgaatccatgttccatgcggagaacaatagaaactcttggagttacagaatgaccttccacaacttgtatgtgaaacttccataacata 13086033  T
Q  201 gcagctgcaaccattttcatttgaacaatgctaatatctttcccaagacaacttcgaggacctgcattgaatgctatgaa 280  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  13086034 gcagctgcaaccattttcatttgaacaatgctaatatctttcccaagacaacttcgaggacctgcattaaatgctatgaa 13086113  T

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Target: chr1; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 132 - 280
Target Start/End: Original strand, 13271444 - 13271592
Alignment:
Q  132 agaacaatagaaactcttggagttacagaatgaccttccacaacttgtatgtgaaacttccataatatagcagctgcaaccattttcatttgaacaatgc 231  Q
    |||||||| ||||| || ||||| ||||| ||||||||||| || |||||||||||||||||||||| || ||||||||||||||||||||||| || ||    
T  13271444 agaacaatcgaaaccctaggagtaacagactgaccttccaccacatgtatgtgaaacttccataatacagaagctgcaaccattttcatttgaataaagc 13271543  T
Q  232 taatatctttcccaagacaacttcgaggacctgcattgaatgctatgaa 280  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  13271544 taatatctttcccaagacagcttctaggacctgcattgaatgctatgaa 13271592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 82 - 280
Target Start/End: Complemental strand, 12964259 - 12964061
Alignment:
Q  82 atcaaattcatcttctactaactttgactttgaatccatgttccatgcggagaacaatagaaactcttggagttacagaatgaccttccacaacttgtat 181  Q
    ||||||| ||||||  ||| |||||||| || || ||||||| ||| || ||||| |||| ||| |||||||| ||| | ||||||||||| |||| |||    
T  12964259 atcaaatgcatctttgactgactttgaccttcaaaccatgtttcatacgaagaaccatagcaacccttggagtaacaaagtgaccttccaccacttctat 12964160  T
Q  182 gtgaaacttccataatatagcagctgcaaccattttcatttgaacaatgctaatatctttcccaagacaacttcgaggacctgcattgaatgctatgaa 280  Q
    |||||||||||| || | |  ||| |||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  12964159 gtgaaacttccacaacacattagcagcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctaggacctgcattgaatgctatgaa 12964061  T

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Target: chr1; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 49 - 280
Target Start/End: Complemental strand, 13081282 - 13081051
Alignment:
Q  49 cattcttaacttcacaaaactgataatgtttatatcaaattcatcttctactaactttgactttgaatccatgttccatgcggagaacaatagaaactct 148  Q
    |||||| ||||| | ||||||  ||||| ||||||||||| |||||| ||| || |||||| || || |||||||||||||| || | ||||||||| ||    
T  13081282 cattctgaactttataaaacttgtaatgcttatatcaaatgcatcttttacgaattttgaccttaaagccatgttccatgcgaaggagaatagaaaccct 13081183  T
Q  149 tggagttacagaatgaccttccacaacttgtatgtgaaacttccataatatagcagctgcaaccattttcatttgaacaatgctaatatctttcccaaga 248  Q
     ||| |||  || ||||||||||| || || |||||||||||  |||| |  ||||||||||||||||||||||||| ||  ||||||||||||||||||    
T  13081182 aggaattattgagtgaccttccaccacctgaatgtgaaacttaaataaaactgcagctgcaaccattttcatttgaagaaaactaatatctttcccaaga 13081083  T
Q  249 caacttcgaggacctgcattgaatgctatgaa 280  Q
    || ||||  ||||||||||| || ||||||||    
T  13081082 cagcttcttggacctgcattaaacgctatgaa 13081051  T

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Target: chr1; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 78 - 280
Target Start/End: Complemental strand, 13244909 - 13244707
Alignment:
Q  78 ttatatcaaattcatcttctactaactttgactttgaatccatgttccatgcggagaacaatagaaactcttggagttacagaatgaccttccacaactt 177  Q
    ||||||||||| |||||| |||| |||| ||| || || || |||| |||||| |  |||||||||  |||  | |||||||  ||||||||||| || |    
T  13244909 ttatatcaaatgcatcttttactgacttcgacctttaagccgtgtttcatgcgaacgacaatagaagttctcagcgttacagggtgaccttccaccacct 13244810  T
Q  178 gtatgtgaaacttccataatatagcagctgcaaccattttcatttgaacaatgctaatatctttcccaagacaacttcgaggacctgcattgaatgctat 277  Q
    ||||| ||||||||||||| | || |||||||||||||||||||||||| | ||||| ||||||||||| |||||||| ||||||||||||||| |||||    
T  13244809 gtatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacgaagctaagatctttcccaatacaacttctaggacctgcattgaaagctat 13244710  T
Q  278 gaa 280  Q
    |||    
T  13244709 gaa 13244707  T

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Target: chr1; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 162 - 280
Target Start/End: Complemental strand, 19279472 - 19279354
Alignment:
Q  162 tgaccttccacaacttgtatgtgaaacttccataatatagcagctgcaaccattttcatttgaacaatgctaatatctttcccaagacaacttcgaggac 261  Q
    ||||||||||| || |||||| ||||||||||||||| ||||||||||||||||||||||||||  |   |||||||||| || ||||| ||||  ||||    
T  19279472 tgaccttccacgacctgtatgcgaaacttccataatacagcagctgcaaccattttcatttgaaggaaagtaatatcttttccgagacagcttctcggac 19279373  T
Q  262 ctgcattgaatgctatgaa 280  Q
    ||||||| || ||||||||    
T  19279372 ctgcattaaacgctatgaa 19279354  T

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Target: chr1; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 83 - 280
Target Start/End: Complemental strand, 30368491 - 30368294
Alignment:
Q  83 tcaaattcatcttctactaactttgactttgaatccatgttccatgcggagaacaatagaaactcttggagttacagaatgaccttccacaacttgtatg 182  Q
    |||||| |||||| || |||| ||||| || || ||||||| ||| |  || |||| |||| | || || |||||||  ||||||||||| || ||||||    
T  30368491 tcaaatgcatcttttagtaaccttgacgttcaagccatgtttcattcaaaggacaacagaagccctaggggttacagggtgaccttccacgacctgtatg 30368392  T
Q  183 tgaaacttccataatatagcagctgcaaccattttcatttgaacaatgctaatatctttcccaagacaacttcgaggacctgcattgaatgctatgaa 280  Q
    |||||||||||||| |  |||||||||||||| ||||||||||| |  |||| |||||| || | |||||||| ||| |||| |||||| ||||||||    
T  30368391 tgaaacttccataacaaggcagctgcaaccatcttcatttgaacgaaactaagatctttacccatacaacttctaggtcctgtattgaaagctatgaa 30368294  T

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Target: chr1; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 83 - 280
Target Start/End: Complemental strand, 13070559 - 13070362
Alignment:
Q  83 tcaaattcatcttctactaactttgactttgaatccatgttccatgcggagaacaatagaaactcttggagttacagaatgaccttccacaacttgtatg 182  Q
    |||||| |||||| || | ||||| || ||||| ||||||| |||| | |||||||  ||||   |||| |||||||  ||||||||||| || ||||||    
T  13070559 tcaaatgcatcttttagtgactttaaccttgaagccatgtttcatgtgaagaacaaatgaaagctttggggttacagggtgaccttccaccacctgtatg 13070460  T
Q  183 tgaaacttccataatatagcagctgcaaccattttcatttgaacaatgctaatatctttcccaagacaacttcgaggacctgcattgaatgctatgaa 280  Q
    |||||||||  ||| | ||||||||| ||||| ||||||||||  |  |||| |||||| || | ||||||||  ||||||| |||||| ||||||||    
T  13070459 tgaaacttctgtaacaaagcagctgcgaccatcttcatttgaatgaaactaagatctttacccaaacaacttctcggacctgtattgaaagctatgaa 13070362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 79 - 280
Target Start/End: Complemental strand, 13065600 - 13065399
Alignment:
Q  79 tatatcaaattcatcttctactaactttgactttgaatccatgttccatgcggagaacaatagaaactcttggagttacagaatgaccttccacaacttg 178  Q
    |||||||||| |||||| || | ||| |||| || || ||||||| ||| | |||   ||||||||  ||||||||||||| |||||| ||||| |  ||    
T  13065600 tatatcaaatgcatcttttagtgactatgaccttcaagccatgtttcattccgagggtaatagaaagccttggagttacaggatgaccatccactaaatg 13065501  T
Q  179 tatgtgaaacttccataatatagcagctgcaaccattttcatttgaacaatgctaatatctttcccaagacaacttcgaggacctgcattgaatgctatg 278  Q
    ||||  ||||||||||| |||||| || ||| |||| ||||||| ||| | | | |||||||| || | ||||||||  || ||||||||||| ||||||    
T  13065500 tatgcaaaacttccatagtatagccgcggcagccatcttcatttcaacgaaggtgatatctttacccaaacaacttcttggccctgcattgaaagctatg 13065401  T
Q  279 aa 280  Q
    ||    
T  13065400 aa 13065399  T

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Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 117 - 241
Target Start/End: Original strand, 13094242 - 13094366
Alignment:
Q  117 ccatgttccatgcggagaacaatagaaactcttggagttacagaatgaccttccacaacttgtatgtgaaacttccataatatagcagctgcaaccattt 216  Q
    ||||||| |||||| ||||  | |||||  ||||| |||||||  ||||||||||| || |||||||||||||||| ||| | ||||||||| ||||| |    
T  13094242 ccatgtttcatgcgaagaaacacagaaagccttggggttacagggtgaccttccaccacctgtatgtgaaacttccgtaacaaagcagctgcgaccatct 13094341  T
Q  217 tcatttgaacaatgctaatatcttt 241  Q
    |||||||||  |  |||||||||||    
T  13094342 tcatttgaatgaaactaatatcttt 13094366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 85 - 280
Target Start/End: Original strand, 13100812 - 13101006
Alignment:
Q  85 aaattcatcttctactaactttgactttgaatccatgttccatgcggagaacaatagaaactcttggagttacagaatgaccttccacaacttgtatgtg 184  Q
    |||| |||||| || | |||||||| || || ||||||| |||| | ||||||| |||||   | || |||| ||  ||||||||||| || ||||||||    
T  13100812 aaatgcatcttttagtgactttgaccttcaagccatgtttcatgtgaagaacaaaagaaagcttcggggttatagggtgaccttccaccacctgtatgtg 13100911  T
Q  185 aaacttccataatatagcagctgcaaccattttcatttgaacaatgctaatatctttcccaagacaacttcgaggacctgcattgaatgctatgaa 280  Q
    |||||||  ||| | ||||||||| ||||| ||||||||||  | ||||||||| || || | |||||||| ||| |||| |||||| ||||||||    
T  13100912 aaacttcggtaacaaagcagctgcgaccatcttcatttgaatgaagctaatatccttacccatacaacttctaggtcctg-attgaaagctatgaa 13101006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 117 - 225
Target Start/End: Original strand, 13129671 - 13129779
Alignment:
Q  117 ccatgttccatgcggagaacaatagaaactcttggagttacagaatgaccttccacaacttgtatgtgaaacttccataatatagcagctgcaaccattt 216  Q
    ||||||| |||||| ||||  | |||||  ||||| |||||||  ||||||||||| || |||||||||||||||  ||| | ||||||||| ||||| |    
T  13129671 ccatgtttcatgcgaagaagcacagaaagccttggggttacagggtgaccttccaccacctgtatgtgaaacttctgtaacaaagcagctgcgaccatct 13129770  T
Q  217 tcatttgaa 225  Q
    |||||||||    
T  13129771 tcatttgaa 13129779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 117 - 225
Target Start/End: Original strand, 13161364 - 13161472
Alignment:
Q  117 ccatgttccatgcggagaacaatagaaactcttggagttacagaatgaccttccacaacttgtatgtgaaacttccataatatagcagctgcaaccattt 216  Q
    ||||||| |||||| ||||  | |||||  ||||| ||||||   ||||||||||| || |||||||||||||||| ||| | ||||||||| ||||| |    
T  13161364 ccatgtttcatgcgaagaaacacagaaagccttggggttacaaggtgaccttccaccacctgtatgtgaaacttccgtaacaaagcagctgcgaccatct 13161463  T
Q  217 tcatttgaa 225  Q
    |||||||||    
T  13161464 tcatttgaa 13161472  T

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Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 83 - 280
Target Start/End: Original strand, 13204268 - 13204465
Alignment:
Q  83 tcaaattcatcttctactaactttgactttgaatccatgttccatgcggagaacaatagaaactcttggagttacagaatgaccttccacaacttgtatg 182  Q
    |||||| |||||| || | ||||| || || || |||| || |||| | ||||||| |||||   |||| |||||||  ||||||||||| |  | ||||    
T  13204268 tcaaatgcatcttttagtgactttaacctttaaaccatatttcatgtgaagaacaaaagaaatctttggggttacagggtgaccttccactatctttatg 13204367  T
Q  183 tgaaacttccataatatagcagctgcaaccattttcatttgaacaatgctaatatctttcccaagacaacttcgaggacctgcattgaatgctatgaa 280  Q
    ||||| |||  ||| | ||||||||| ||||| ||||||||||  |  |||| |||||| || | |||||||| |||||||| |||||| ||||||||    
T  13204368 tgaaaattctgtaacaaagcagctgcgaccatcttcatttgaatgaaactaagatctttacccaaacaacttctaggacctgtattgaaagctatgaa 13204465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 221
Target Start/End: Original strand, 13010616 - 13010720
Alignment:
Q  117 ccatgttccatgcggagaacaatagaaactcttggagttacagaatgaccttccacaacttgtatgtgaaacttccataatatagcagctgcaaccattt 216  Q
    |||||||  ||||| |||| |||||||| | |||| ||||  | |||||||||||| ||||||||| |||| |||||||| | | ||||||| ||||| |    
T  13010616 ccatgttttatgcgaagaataatagaaagttttggggttatggcatgaccttccaccacttgtatgcgaaatttccataacaaatcagctgcgaccatct 13010715  T
Q  217 tcatt 221  Q
    |||||    
T  13010716 tcatt 13010720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 280
Target Start/End: Original strand, 13007088 - 13007206
Alignment:
Q  162 tgaccttccacaacttgtatgtgaaacttccataatatagcagctgcaaccattttcatttgaacaatgctaatatctttcccaagacaacttcgaggac 261  Q
    |||||| |||| || | ||||||||||||   ||| | ||| ||||| ||||| ||||||||||  | ||||||||| || || | |||||||| |||||    
T  13007088 tgacctgccaccacctttatgtgaaactttggtaacaaagctgctgcgaccatcttcatttgaatgaagctaatatccttgcccatacaacttctaggac 13007187  T
Q  262 ctgcattgaatgctatgaa 280  Q
    ||| |||||| ||||||||    
T  13007188 ctgtattgaaagctatgaa 13007206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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