View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8699_low_5 (Length: 258)
Name: NF8699_low_5
Description: NF8699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8699_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 129 - 250
Target Start/End: Complemental strand, 24819570 - 24819450
Alignment:
| Q |
129 |
ttgatcaaaactcagcgaaagggtcaaggagaaaccttagaaaaatagggtggaaggatgagggaagatgcgatagagtgagaggaaaaagcattcaata |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
24819570 |
ttgatcaaaactcagcgaaagggtcaaggagaaaccttagaaaaatagggtggaaggatgagggaagatgcgatagagtgagaggaaaaag-agaaaata |
24819472 |
T |
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| Q |
229 |
atgtggggactgaacatattac |
250 |
Q |
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|||||| ||||||||||||||| |
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| T |
24819471 |
atgtggagactgaacatattac |
24819450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 24819863 - 24819727
Alignment:
| Q |
1 |
ttaagattgtgttaagagctaaaaacaaaccaccaacaacatctatttgcagaaacaaagcatgaatccaacaacatacattttgtctnnnnnnnnnnnn |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24819863 |
ttaagattgtgttaagagctaaaaacaaaccaccaacaacatctatttgcagaaacaaagcatgaatccaacaacatacattttgtctaaaaaaattaaa |
24819764 |
T |
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| Q |
101 |
nncaattgatgaacaatttaatactaatttgatcaaa |
137 |
Q |
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| T |
24819763 |
aacaattgatgaacaatttaatactaatttgatcaaa |
24819727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 53554912 - 53554964
Alignment:
| Q |
1 |
ttaagattgtgttaagagctaaaaacaaaccaccaacaacatctatttgcagaa |
54 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
53554912 |
ttaagattgtgttaagagctaaaaa-aaaccaccaacaacatcgatttgcagaa |
53554964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 131 - 217
Target Start/End: Original strand, 10426201 - 10426286
Alignment:
| Q |
131 |
gatcaaaactcagcgaaagggtcaaggagaaaccttagaaaaatagggtggaaggatgagggaagatgcgatagagtgagaggaaaa |
217 |
Q |
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|||||||||||| || |||||| ||| |||||| |||||||||||||||||||||| |||||| ||| ||||| |||||| ||||| |
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| T |
10426201 |
gatcaaaactcaacgcaagggtaaagaagaaacagtagaaaaatagggtggaaggataagggaaaatgggatag-gtgagaagaaaa |
10426286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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