View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8699_low_6 (Length: 257)
Name: NF8699_low_6
Description: NF8699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8699_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 19 - 253
Target Start/End: Complemental strand, 31333939 - 31333705
Alignment:
| Q |
19 |
aaggtacaggtcccaaattgccatcatcaaaaggcctagcctacccttgattatggttcagacattatatcgagtaagagtctatggttcaaatccatgg |
118 |
Q |
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| T |
31333939 |
aaggtacaggtcccaaatagccatcatcaaaaggcctagcctacccttgattatggttcaaacattatatcgagtaagagtctatggttcaaatccatgg |
31333840 |
T |
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| Q |
119 |
aaattaaacagatggatcaaccccaacattctcaaacacaattcacccttggttgtttcccaaccctcaatctgctctttccttcggaaggatgcatatt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
31333839 |
aaattaaacagatggatcaaccccaacattctcaaacacaattcacccttggttgtttcccaaccctcaatctgctctttccttcgtaaggatgcatatt |
31333740 |
T |
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| Q |
219 |
gaaatctcctaatgtaaaccaggaaactccaaact |
253 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
31333739 |
gaaatctcctaatgtaaaccaggaaactccaaact |
31333705 |
T |
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