View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8699_low_8 (Length: 225)
Name: NF8699_low_8
Description: NF8699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8699_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 33388490 - 33388295
Alignment:
| Q |
1 |
gtgccggaagaactcaaccggggaaatgctatagactctataccaaaataagtttcagtaatgatcttcagccgcagacctatcctggaattttgagatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
33388490 |
gtgccggaagaactcaaccggggaaatgctatagactctataccgaaataagtttcagtaatgatcttcagccgcagacctatcctgaaattttgagatc |
33388391 |
T |
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| Q |
101 |
taatcttgcaaacactgttcttacattgaagaaattgggtatagatgatttagttcattttgacttcatggaccctcctgctcctgaaaccttaat |
196 |
Q |
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| T |
33388390 |
taatcttgcaaacacggttcttacattgaagaaattgggtatagatgatttagttcattttgacttcatggaccctcctgctcctgaaaccttaat |
33388295 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 38779531 - 38779339
Alignment:
| Q |
1 |
gtgccggaagaactcaaccggggaaatgctatagactctataccaaaataagtttcagtaatgatcttcagccgcagacctatcctggaattttgagatc |
100 |
Q |
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|||| ||||||||||| ||||||||||||| |||||| |||||| ||| |||||||| ||||||||||||||||||||||||||||| |||||||||||| |
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| T |
38779531 |
gtgctggaagaactcagccggggaaatgctttagactttataccgaaagaagtttcaataatgatcttcagccgcagacctatcctgaaattttgagatc |
38779432 |
T |
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| Q |
101 |
taatcttgcaaacactgttcttacattgaagaaattgggtatagatgatttagttcattttgacttcatggaccctcctgctcctgaaacctt |
193 |
Q |
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| T |
38779431 |
taatcttgccaacacagttcttacattgaagaaactgggtatagatgatttagttcattttgacttcatggaccctcctgcccctgaaacctt |
38779339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 120; Significance: 1e-61; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 20816614 - 20816809
Alignment:
| Q |
1 |
gtgccggaagaactcaaccggggaaatgctatagactctataccaaaataagtttcagtaatgatcttcagccgcagacctatcctggaattttgagatc |
100 |
Q |
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|||| |||||||| ||||| |||||||||| |||||| ||||| ||| |||||||| ||||||||||||||||||||||||||||| |||||||||||| |
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| T |
20816614 |
gtgctggaagaacacaaccagggaaatgctttagactttatacggaaagaagtttcaataatgatcttcagccgcagacctatcctgaaattttgagatc |
20816713 |
T |
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| Q |
101 |
taatcttgcaaacactgttcttacattgaagaaattgggtatagatgatttagttcattttgacttcatggaccctcctgctcctgaaaccttaat |
196 |
Q |
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|||||| || ||||| |||||||| |||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| || ||||||||||| |
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| T |
20816714 |
taatctcgccaacacagttcttactttgaagaaattgggtatagacgatttagtacattttgactttatggaccctcctgcaccagaaaccttaat |
20816809 |
T |
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