View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8700_1 (Length: 415)
Name: NF8700_1
Description: NF8700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8700_1 |
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Alignment Details
Target: chr1 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 11 - 387
Target Start/End: Original strand, 6314855 - 6315231
Alignment:
| Q |
11 |
gcagaacctgtgaccgttagggaattaaaagcacacaagtggattgcaaaaagggacagaagtcactctttcccttcctacacacagcacctcctaaggc |
110 |
Q |
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| T |
6314855 |
gcagaacctgtgactgttagggaattaaaagcacacaagtggattgcaaaaagggccagaagtcactctttcccttcctacacacagcacctcctaaggc |
6314954 |
T |
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| Q |
111 |
atatcttctttgaatggcaagaaactacaacagcttaggggaatagtgacctatgacctcaaattcaaacgcatgcaggggacattttcatcacgtgcag |
210 |
Q |
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| T |
6314955 |
atatcttctttgaatggcaagagactacaacagcttaggggaatagtaacctatgacctcaaattcaaacgcatgcaggggacattttcatcatgtgcag |
6315054 |
T |
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| Q |
211 |
agtttatttttactgtcatcaacaactgcacaacaatgattatgaatggtttaactatggtgttgtggaatatatggaagagaagaagtaagcagctttg |
310 |
Q |
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| T |
6315055 |
aatttatttttactgtcatcaacaactgcacaacaatgattatgaatggtttaactatggtgttgtggaatatatggaagagaagaagtaagcagctttg |
6315154 |
T |
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| Q |
311 |
gaatatgcctggcaacaatccaacaagctatttagttccctgttgttttgaaatggcaaaagaaaaagcagcaaaat |
387 |
Q |
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| T |
6315155 |
gaatatgcctggcaacaatccaacaagctatttagttccctgttgttttgaaatggcaaaagaaaaagcagcaaaat |
6315231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 110 - 260
Target Start/End: Original strand, 6318086 - 6318236
Alignment:
| Q |
110 |
catatcttctttgaatggcaagaaactacaacagcttaggggaatagtgacctatgacctcaaattcaaacgcatgcaggggacattttcatcacgtgca |
209 |
Q |
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| T |
6318086 |
catatcttgtttgaatgccaagaggctataaaagtttgggagtatagtgaaatatgaccttaaattcaaacgtatgtaggt--cagtttcatcatgtgga |
6318183 |
T |
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| Q |
210 |
gag--tttatttttactgtcatcaacaactgcacaacaatgattatgaatggt |
260 |
Q |
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| T |
6318184 |
gagaatttaattttactgtcatcaacagctgcacaacaaggattatgaatggt |
6318236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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