View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8700_low_1 (Length: 495)
Name: NF8700_low_1
Description: NF8700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8700_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 2875242 - 2874890
Alignment:
| Q |
1 |
gaactcactgtggtaccagttgactaagccttaaatgataattgacatcatcaagtagcaacataaacctgtcgcttctagtttccactaattaacttta |
100 |
Q |
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| T |
2875242 |
gaactcactgtggtaccagttgactaagccttaaatgataattgacatcatcaagtagcaacataaacctgtcgcttctagtttccactaattaacttta |
2875143 |
T |
|
| Q |
101 |
gcatttcgctttcatatactcaaatcaaaggtcatgaacaacaactcttcaaaaagcaatgcaaataagaaaggaagnnnnnnnnnnca-ggtttacaga |
199 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
2875142 |
gcatttcgctttcatatactcaaa-----ggtcatgaacaacaactcttcaaaaagcaatgcaaataagaaaggaagaagaaaaaaaaaaggtttacaga |
2875048 |
T |
|
| Q |
200 |
atgttcagccaggtgtagatggttgttatgcatggtccaggtttgagcaacctctattgacataaaatatacgtaaagagacttctaataactcactagc |
299 |
Q |
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| T |
2875047 |
atgttcagctaggtgtagatggttgttatgcatggtccaggtttgagcaacctctattgacataaaatatatgtaaagagacttctaataactcactagc |
2874948 |
T |
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| Q |
300 |
aattattgaaatcgagttcaaatggttgtcattaatttgttgaaaaagcaactaaagc |
357 |
Q |
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| T |
2874947 |
aattattgaaatcgagttcaaatggttgtcattaatttgctgaaaaagcaactaaagc |
2874890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 369 - 481
Target Start/End: Complemental strand, 2874689 - 2874577
Alignment:
| Q |
369 |
caacttcaagttaatttagtctttatatttaatcacttactataaatttagcctctaacattactattgagtcgggctctgactcacaagaactaattgt |
468 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||| ||| |
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| T |
2874689 |
caacttcaagttaatttagtctttatatttaatcacttactataaatttagcctctaacgttactattgagtcgggttgtgactcacaagaactaaatgt |
2874590 |
T |
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| Q |
469 |
ttacgaatgtttt |
481 |
Q |
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| T |
2874589 |
ttacgaatgtttt |
2874577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 419
Target Start/End: Complemental strand, 48110851 - 48110813
Alignment:
| Q |
381 |
aatttagtctttatatttaatcacttactataaatttag |
419 |
Q |
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||||||||||||||||| ||||||||||||| ||||||| |
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| T |
48110851 |
aatttagtctttatattcaatcacttactatcaatttag |
48110813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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