View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8700_low_3 (Length: 369)
Name: NF8700_low_3
Description: NF8700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8700_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 31669816 - 31670168
Alignment:
| Q |
1 |
gaaggtgaagacttggaagtgttgatgaataactattcgacttgccaagttaa-gttacgcttgtttttgttggcactggtttctttaattatagtgaac |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31669816 |
gaaggtgaagacttggaagtgttgatgaataactattcgacttgccaagttaaagttacgcttgtttttgttggcactggtttctttaattatagtgaac |
31669915 |
T |
|
| Q |
100 |
attatgctagtgtttgtaatgtacacatgatttaaatttatagtcttggcttcttgataattaattattggatgtggtagttagtcatgtgaatctaaag |
199 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31669916 |
attatgccagtgtttgtaatgtacacatgatttaaatttatagtcttggcttcttgataattaattattggatgtggtagttagtcatgtgaatctaaag |
31670015 |
T |
|
| Q |
200 |
ctgtatagtcatgtttatggtttaaattaaaatgagatgcaatgtggatttatacaaatctaggctttcttcaagttcatccataagaagtgcagattcc |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31670016 |
ctgtatagtcatgtttatggtttaaattaaaatgagatgcaatgtggatttatacaaatctaggctttcttcaagttcatccataagaagtgcagattcc |
31670115 |
T |
|
| Q |
300 |
ttgcctgaattatcggtgttttacaaattatttttaattgattttgaaataac |
352 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
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| T |
31670116 |
ttgcctgaattataggtgttttacgaattatttttaattgattttgaaataac |
31670168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 35986549 - 35986901
Alignment:
| Q |
1 |
gaaggtgaagacttggaagtgttgatgaataactattcgacttgccaagttaa-gttacgcttgtttttgttggcactggtttctttaattatagtgaac |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35986549 |
gaaggtgaagacttggaagtgttgatgaataactattcgacttgccaagttaaagttacgcttgtttttgttggcactggtttctttaattatagtgaac |
35986648 |
T |
|
| Q |
100 |
attatgctagtgtttgtaatgtacacatgatttaaatttatagtcttggcttcttgataattaattattggatgtggtagttagtcatgtgaatctaaag |
199 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35986649 |
attatgcctgtgtttgtaatgtacacatgatttaaatttatagtcttggcttcttgataattaattattggatgtggtagttagtcatgtgaatctaaag |
35986748 |
T |
|
| Q |
200 |
ctgtatagtcatgtttatggtttaaattaaaatgagatgcaatgtggatttatacaaatctaggctttcttcaagttcatccataagaagtgcagattcc |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35986749 |
ctgtatagtcatgtttatggtttaaattaaaatgagatgcaatgtggatttatacaaatctaggctttcttcaagttcatccataagaagtgcagattcc |
35986848 |
T |
|
| Q |
300 |
ttgcctgaattatcggtgttttacaaattatttttaattgattttgaaataac |
352 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
35986849 |
ttgcctgaattataggtgttttacgaattatttttaattgattttgaaataac |
35986901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 36007957 - 36008309
Alignment:
| Q |
1 |
gaaggtgaagacttggaagtgttgatgaataactattcgacttgccaagttaa-gttacgcttgtttttgttggcactggtttctttaattatagtgaac |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36007957 |
gaaggtgaagacttggaagtgttgatgaataactattcgacttgccaagttaaagttacgcttgtttttgttggcactggtttctttaattatagtgaac |
36008056 |
T |
|
| Q |
100 |
attatgctagtgtttgtaatgtacacatgatttaaatttatagtcttggcttcttgataattaattattggatgtggtagttagtcatgtgaatctaaag |
199 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36008057 |
attatgcctgtgtttgtaatgtacacatgatttaaatttatagtcttggcttcttgataattaattattggatgtggtagttagtcatgtgaatctaaag |
36008156 |
T |
|
| Q |
200 |
ctgtatagtcatgtttatggtttaaattaaaatgagatgcaatgtggatttatacaaatctaggctttcttcaagttcatccataagaagtgcagattcc |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36008157 |
ctgtatagtcatgtttatggtttaaattaaaatgagatgcaatgtggatttatacaaatctaggctttcttcaagttcatccataagaagtgcagattcc |
36008256 |
T |
|
| Q |
300 |
ttgcctgaattatcggtgttttacaaattatttttaattgattttgaaataac |
352 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
36008257 |
ttgcctgaattataggtgttttacgaattatttttaattgattttgaaataac |
36008309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 33047709 - 33047357
Alignment:
| Q |
1 |
gaaggtgaagacttggaagtgttgatgaataactattcgacttgccaagttaa-gttacgcttgtttttgttggcactggtttctttaattatagtgaac |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33047709 |
gaaggtgaagacttggaagtgttgatgaataactattcgacttgccaagttaaagttacgcttgtttttgttggcactggtttctttaattatagtgaac |
33047610 |
T |
|
| Q |
100 |
attatgctagtgtttgtaatgtacacatgatttaaatttatagtcttggcttcttgataattaattattggatgtggtagttagtcatgtgaatctaaag |
199 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33047609 |
attatgccggtgtttgtaatgtacacatgatttaaatttatagtcttggcttcttgataattaattattggatgtggtagttagtcatgtgaatctaaag |
33047510 |
T |
|
| Q |
200 |
ctgtatagtcatgtttatggtttaaattaaaatgagatgcaatgtggatttatacaaatctaggctttcttcaagttcatccataagaagtgcagattcc |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33047509 |
ctgtatagtcatgtttatggtttaaattaaaatgagatgcaatgtggatttatacaaatctaggctttcttcaagttcatccataagaagtgcagattcc |
33047410 |
T |
|
| Q |
300 |
ttgcctgaattatcggtgttttacaaattatttttaattgattttgaaataac |
352 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
33047409 |
ttgcctgaattataggtgttttacgaattatttttaattgattttgaaataac |
33047357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 146; Significance: 8e-77; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 112 - 278
Target Start/End: Original strand, 32043286 - 32043454
Alignment:
| Q |
112 |
tttgtaatgtaca--catgatttaaatttatagtcttggcttcttgataattaattattggatgtggtagttagtcatgtgaatctaaagctgtatagtc |
209 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
32043286 |
tttgtaatgtacagacatgatttaaatttatagtcttggcttcttgacaattaattattggctgtggtagttagtcatgtgaatccaaagctgtatagtc |
32043385 |
T |
|
| Q |
210 |
atgtttatggtttaaattaaaatgagatgcaatgtggatttatacaaatctaggctttcttcaagttca |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32043386 |
atgtttatggtttaaattaaaatgagatgcaatgtggatttatacaaatctaggctttcttcaagttca |
32043454 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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