View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8701_high_1 (Length: 605)
Name: NF8701_high_1
Description: NF8701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8701_high_1 |
 | |
|
| [»] scaffold0294 (1 HSPs) |
| | |
|
| [»] scaffold0286 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 522; Significance: 0; HSPs: 31)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 15 - 586
Target Start/End: Complemental strand, 5101492 - 5100920
Alignment:
| Q |
15 |
gacatcatttgtatgaactttgtttttatgaagnnnnnnnnn-ctgttacaaacttacaggcttcaaaaagcgcattttagagcggtaaaatttgttact |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5101492 |
gacatcatttgtatgaactttgtttttatgaagaaaaaaaaaactgttacaaacttacaggcttcaaaaagcgcattttagagcggtaaaatttgttact |
5101393 |
T |
|
| Q |
114 |
atcgttattttccctcactattattttggtatgtatggagttcataagtaggactgatagttggttttatgaatccaagcaaatatttctctgtaacgtc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5101392 |
atcgttattttccctcactattattttggtatgtatggagttcataagtaggactgatagttggttttatgaatccaagcaaatatttctctgtaacgtc |
5101293 |
T |
|
| Q |
214 |
aaaatatgattaattaccttatgaggaaaagttaaatctttaattgttgaataaatgataagttgaagttaacatacatttcgatgaaattttgcagaat |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
5101292 |
aaaatatgattaattaccttatgaggaaaagttaaatctttaattgttgaataaatgataagttgaagttaacatacatttcaatgtaattttgcagaat |
5101193 |
T |
|
| Q |
314 |
atagatgtcaataggagtggtggttgtttgcttcctggtgatagttatccaaattggttaacctttctttcggaaggttattctgtaactttagaagtcc |
413 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5101192 |
atagatgtcaatagtagtggtggttgtttgcttcctggtgatagttatccaaattggttaacctttctttcggaaggttcttctgtaactttagaagtcc |
5101093 |
T |
|
| Q |
414 |
ctcaagtggaagggcgtaacttgaagacaatgatgtgcattgtctatacttcaaccccagataacataacatcaagtggccttaaaaatgtgttagtgaa |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5101092 |
ctcaagtggaagggcgtaacttgaagacaatgatgtgcattgtctatacttcaaccccagataacataacatcaagtggccttaaaaatgtgttagtgaa |
5100993 |
T |
|
| Q |
514 |
aaattacacaaaggccaccattcagctctataagagcgaggcattagtctcctttgaagatgaggaggctctg |
586 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5100992 |
aaattacacaaaggccaccattcagctctataagagcgaggcattagtctcctttgaagatgaggaggctctg |
5100920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 15 - 586
Target Start/End: Complemental strand, 5136593 - 5136021
Alignment:
| Q |
15 |
gacatcatttgtatgaactttgtttttatgaagnnnnnnnnn-ctgttacaaacttacaggcttcaaaaagcgcattttagagcggtaaaatttgttact |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5136593 |
gacatcatttgtatgaactttgtttttatgaagaaaaaaaaaactgttacaaacttacaggcttcaaaaagcgcattttagagcggtaaaatttgttact |
5136494 |
T |
|
| Q |
114 |
atcgttattttccctcactattattttggtatgtatggagttcataagtaggactgatagttggttttatgaatccaagcaaatatttctctgtaacgtc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5136493 |
atcgttattttccctcactattattttggtatgtatggagttcataagtaggactgatagttggttttatgaatccaagcaaatatttctctgtaacgtc |
5136394 |
T |
|
| Q |
214 |
aaaatatgattaattaccttatgaggaaaagttaaatctttaattgttgaataaatgataagttgaagttaacatacatttcgatgaaattttgcagaat |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
5136393 |
aaaatatgattaattaccttatgaggaaaagttaaatctttaattgttgaataaatgataagttgaagttaacatacatttcaatgaaattttgcagaat |
5136294 |
T |
|
| Q |
314 |
atagatgtcaataggagtggtggttgtttgcttcctggtgatagttatccaaattggttaacctttctttcggaaggttattctgtaactttagaagtcc |
413 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5136293 |
atagatgtcaatagaagtggtggttgtttgcttcctggtgatagttatccaaattggttaacctttctttcggaaggttcttctgtaactttagaagtcc |
5136194 |
T |
|
| Q |
414 |
ctcaagtggaagggcgtaacttgaagacaatgatgtgcattgtctatacttcaaccccagataacataacatcaagtggccttaaaaatgtgttagtgaa |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
5136193 |
ctcaagtggaagggcgtaacttgaagacaatgatgtgcattgtctatacttcaaccccagataacataacatcaagtggccttaaaaatgtgttggtaaa |
5136094 |
T |
|
| Q |
514 |
aaattacacaaaggccaccattcagctctataagagcgaggcattagtctcctttgaagatgaggaggctctg |
586 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
5136093 |
aaattacacaaaggccaccattcagctctacaagagcgaagcattagcctcctttgaagatgaggaggctctg |
5136021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 292 - 581
Target Start/End: Original strand, 5351299 - 5351588
Alignment:
| Q |
292 |
tttcgatgaaattttgcagaatatagatgtcaataggagtggtggttgtttgcttcctggtgatagttatccaaattggttaacctttctttcggaaggt |
391 |
Q |
| |
|
||||||| |||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| | |
|
|
| T |
5351299 |
tttcgattaaattttgcagaatatggatctcaataggagtagtggttgtttgcttcctggtgatagttatccaaattggttaacctttatttcagaagtt |
5351398 |
T |
|
| Q |
392 |
tattctgtaactttagaagtccctcaagtggaagggcgtaacttgaagacaatgatgtgcattgtctatacttcaaccccagataacataacatcaagtg |
491 |
Q |
| |
|
| |||||| | || ||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| | |||| |||||||||||| |
|
|
| T |
5351399 |
tcttctgtgaaatttgaagttcctcaagtggaagggcgtgacttgaagacaatgatgtgcatagtctatacttcaacccctggtaacgtaacatcaagtg |
5351498 |
T |
|
| Q |
492 |
gccttaaaaatgtgttagtgaaaaattacacaaaggccaccattcagctctataagagcgaggcattagtctcctttgaagatgaggagg |
581 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
5351499 |
gccttaaaaacatgttagtgaaaaattacacaaaggccaccattcggctctataagagtgaggcattagtttcctttgaagatgaggagg |
5351588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 303 - 581
Target Start/End: Complemental strand, 5156398 - 5156120
Alignment:
| Q |
303 |
ttttgcagaatatagatgtcaataggagtggtggttgtttgcttcctggtgatagttatccaaattggttaacctttctttcggaaggttattctgtaac |
402 |
Q |
| |
|
|||| |||||||| |||| |||| |||||||||||||||| || || ||||||||||||||||||||||||||| | ||| ||||||| |||||| | |
|
|
| T |
5156398 |
ttttccagaatatggatggcaatgggagtggtggttgtttcctccccagtgatagttatccaaattggttaacctataattctgaaggttcttctgtgaa |
5156299 |
T |
|
| Q |
403 |
tttagaagtccctcaagtggaagggcgtaacttgaagacaatgatgtgcattgtctatacttcaaccccagataacataacatcaagtggccttaaaaat |
502 |
Q |
| |
|
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
5156298 |
atttgaagttcctcaagtggaagggcgtaacttgaagacaatgatgtgcattgtctatacttcaaccccagataatgtaacatgtagtggccttaaaaac |
5156199 |
T |
|
| Q |
503 |
gtgttagtgaaaaattacacaaaggccaccattcagctctataagagcgaggcattagtctcctttgaagatgaggagg |
581 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |||||||| |||||||| | ||||||||||||||| |||| |
|
|
| T |
5156198 |
atgttattgaaaaattacacaaaggccaccattcagctttataagagtgaggcattggcctcctttgaagatgaagagg |
5156120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 308 - 580
Target Start/End: Original strand, 5098126 - 5098398
Alignment:
| Q |
308 |
cagaatatagatgtcaataggagtggtggttgtttgcttcctggtgatagttatccaaattggttaacctttctttcggaaggttattctgtaactttag |
407 |
Q |
| |
|
|||||||| ||| ||||| |||| |||| |||||||||||| |||| |||||||| ||||||||||||||| ||| ||||||| ||| |||||||| |
|
|
| T |
5098126 |
cagaatatggatctcaatgggagcggtgattgtttgcttcccactgatggttatccagattggttaacctttcattctgaaggttcttcggtaacttttc |
5098225 |
T |
|
| Q |
408 |
aagtccctcaagtggaagggcgtaacttgaagacaatgatgtgcattgtctatacttcaaccccagataacataacatcaagtggccttaaaaatgtgtt |
507 |
Q |
| |
|
|||| || ||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||| |||| |
|
|
| T |
5098226 |
aagttccccaagtggaaggccgtagcttgaaaacaatgatgtgcattgtctatacttcaaccccagctaacatgatatcaagtggccttaaaaacatgtt |
5098325 |
T |
|
| Q |
508 |
agtgaaaaattacacaaaggccaccattcagctctataagagcgaggcattagtctcctttgaagatgaggag |
580 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
5098326 |
agtgaaaaaccacacaaaggccaccattcagctctataagagtgaggcattggtctcctttgaagatgaggag |
5098398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 331 - 581
Target Start/End: Original strand, 5448547 - 5448797
Alignment:
| Q |
331 |
tggtggttgtttgcttcctggtgatagttatccaaattggttaacctttctttcggaaggttattctgtaactttagaagtccctcaagtggaagggcgt |
430 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||| |||||||||||||| ||| ||||||| |||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
5448547 |
tggtggttgtttccttcccggtgatagttatccagattggttaacctttaattctgaaggttcttctgtaacttttgaagtccctcaagtggaagagcgt |
5448646 |
T |
|
| Q |
431 |
aacttgaagacaatgatgtgcattgtctatacttcaaccccagataacataacatcaagtggccttaaaaatgtgttagtgaaaaattacacaaaggcca |
530 |
Q |
| |
|
| |||| | || |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||| | |
|
|
| T |
5448647 |
caattgacgtcattgatgtgcattgtctatacttcaaccccagataatgtaacatctagtggccttaaaaatgtgttggtgaaaaattacacaaaggcta |
5448746 |
T |
|
| Q |
531 |
ccattcagctctataagagcgaggcattagtctcctttgaagatgaggagg |
581 |
Q |
| |
|
||||||| |||||||||| ||| ||||||| |||||||||||| |||||| |
|
|
| T |
5448747 |
ccattcaaatctataagagtgagacattagtttcctttgaagataaggagg |
5448797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 300 - 581
Target Start/End: Original strand, 5426807 - 5427088
Alignment:
| Q |
300 |
aaattttgcagaatatagatgtcaataggagtggtggttgtttgcttcctggtgatagttatccaaattggttaacctttctttcggaaggttattctgt |
399 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||| ||| ||||||||||||||| ||||||||||| |||||||||| | ||| ||||||| |||||| |
|
|
| T |
5426807 |
aaattttgcagaatatggatctcaataggagtggtagttttttgcttcctggtgacagttatccaaagtggttaacctatagttctgaaggttcttctgt |
5426906 |
T |
|
| Q |
400 |
aactttagaagtccctcaagtggaagggcgtaacttgaagacaatgatgtgcattgtctatacttcaaccccagataacataacatcaagtggccttaaa |
499 |
Q |
| |
|
|||||| |||| || |||||||||||||||||| |||||||||| |||||||| ||||||||||||||||| | ||| ||| |||||||||||||||| |
|
|
| T |
5426907 |
aacttttcaagttccacaagtggaagggcgtaacctgaagacaattatgtgcatagtctatacttcaacccctggtaatgtaatatcaagtggccttaaa |
5427006 |
T |
|
| Q |
500 |
aatgtgttagtgaaaaattacacaaaggccaccattcagctctataagagcgaggcattagtctcctttgaagatgaggagg |
581 |
Q |
| |
|
| ||||| ||||||||||||||||||||| ||||||||| |||||||| |||| |||||| || |||||||||||||||| |
|
|
| T |
5427007 |
atcatgttattgaaaaattacacaaaggccatcattcagctttataagagtgaggtattagtgtcatttgaagatgaggagg |
5427088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 308 - 581
Target Start/End: Complemental strand, 5353243 - 5352970
Alignment:
| Q |
308 |
cagaatatagatgtcaataggagtggtggttgtttgcttcctggtgatagttatccaaattggttaacctttctttcggaaggttattctgtaactttag |
407 |
Q |
| |
|
|||||||| ||||| ||| | |||||||||||||| || |||||||||||||||||||||||||||||||| || ||||||| |||||||||||| |
|
|
| T |
5353243 |
cagaatatggatgttaatggaagtggtggttgtttcctccctggtgatagttatccaaattggttaaccttctactctgaaggttcttctgtaacttttc |
5353144 |
T |
|
| Q |
408 |
aagtccctcaagtggaagggcgtaacttgaagacaatgatgtgcattgtctatacttcaaccccagataacataacatcaagtggccttaaaaatgtgtt |
507 |
Q |
| |
|
| ||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||| | |||||||||| ||| |||||||||||||||||| |
|
|
| T |
5353143 |
atgtccctctggtggaagggcgtaacttgaagacaatgatgtgcattatctatacgtcaacccaaaataacataacttcatatggccttaaaaatgtgtt |
5353044 |
T |
|
| Q |
508 |
agtgaaaaattacacaaaggccaccattcagctctataagagcgaggcattagtctcctttgaagatgaggagg |
581 |
Q |
| |
|
| ||||||||||||||||| ||||||||||| |||||||| ||||||||| | ||||||||||||||||||| |
|
|
| T |
5353043 |
gctaaaaaattacacaaaggctaccattcagctttataagagagaggcattaatttcctttgaagatgaggagg |
5352970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 308 - 581
Target Start/End: Original strand, 5438926 - 5439199
Alignment:
| Q |
308 |
cagaatatagatgtcaataggagtggtggttgtttgcttcctggtgatagttatccaaattggttaacctttctttcggaaggttattctgtaactttag |
407 |
Q |
| |
|
|||||||| ||||||||| |||||| |||| |||| || || |||||||||||||||||||||||||||||| ||| ||||||| |||||||||||| |
|
|
| T |
5438926 |
cagaatatggatgtcaatgggagtgatggtcgttttctccccggtgatagttatccaaattggttaacctttaattctgaaggttcttctgtaacttttc |
5439025 |
T |
|
| Q |
408 |
aagtccctcaagtggaagggcgtaacttgaagacaatgatgtgcattgtctatacttcaaccccagataacataacatcaagtggccttaaaaatgtgtt |
507 |
Q |
| |
|
||||||||||||||||||||||||| |||| | || ||||||||||||||||| ||||||| || ||||||||||||||| | |||||| |||||| || |
|
|
| T |
5439026 |
aagtccctcaagtggaagggcgtaatttgatgtcattgatgtgcattgtctattcttcaactccggataacataacatcagatagccttataaatgtatt |
5439125 |
T |
|
| Q |
508 |
agtgaaaaattacacaaaggccaccattcagctctataagagcgaggcattagtctcctttgaagatgaggagg |
581 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||| |
|
|
| T |
5439126 |
ggtgataaatcacacaaaggccaccattcagctctataagagtgaggctgtagtctcttttgaagatgaggagg |
5439199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 307 - 581
Target Start/End: Original strand, 5372011 - 5372285
Alignment:
| Q |
307 |
gcagaatatagatgtcaataggagtggtggttgtttgcttcctggtgatagttatccaaattggttaacctttctttcggaaggttattctgtaacttta |
406 |
Q |
| |
|
||||||||| |||| ||| |||||||||||||||| || || |||||||||||||||||||||||||| | ||| ||||||| |||||| | || |
|
|
| T |
5372011 |
gcagaatatggatggcaacgggagtggtggttgtttcctccccaatgatagttatccaaattggttaacctatagttctgaaggttcttctgtgaaattt |
5372110 |
T |
|
| Q |
407 |
gaagtccctcaagtggaagggcgtaacttgaagacaatgatgtgcattgtctatacttcaaccccagataacataacatcaagtggccttaaaaatgtgt |
506 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||| || ||||| ||||||| |||||||||||||| ||| |
|
|
| T |
5372111 |
gaagttcctcaagtggaagggcgtaacttgaagacaattatgtgcaatgtctgtacttcaactccggataatgtaacatctagtggccttaaaaacatgt |
5372210 |
T |
|
| Q |
507 |
tagtgaaaaattacacaaaggccaccattcagctctataagagcgaggcattagtctcctttgaagatgaggagg |
581 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||| |||| |
|
|
| T |
5372211 |
tattgaaaaattacacaaaggccaccattcagctttataagagtgaagcattagtctcctttgaagatgaagagg |
5372285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 166 - 546
Target Start/End: Complemental strand, 5283750 - 5283363
Alignment:
| Q |
166 |
actgatagttggttttatgaatccaagcaaatatttctctgtaacgtcaaaatatgattaattaccttatgaggaaaagttaaatctttaattgttgaat |
265 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| | |||||| ||||||||||||||| |||||||| ||| || |||| ||||| ||||||||||| |
|
|
| T |
5283750 |
actgatagtctgttttatgaatccaagcaaatatttatttgtaacatcaaaatatgattaactaccttataagggaa-gttatatcttcaattgttgaat |
5283652 |
T |
|
| Q |
266 |
aaatgataagttgaagttaacatacatttcgatgaaattttg-----------------cagaatatagatgtcaataggagtggtggttgtttgcttcc |
348 |
Q |
| |
|
||||||||| ||| || | |||| | || || |||||||| |||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
5283651 |
aaatgataaagtgatatttatatacttgtcaataaaattttgagcataccttacttttacagaatatggatgtcaataggagtggtgattgtttgcttcc |
5283552 |
T |
|
| Q |
349 |
tggtgatagttatccaaattggttaacctttctttcggaaggttattctgtaactttagaagtccctcaagtggaagggcgtaacttgaagacaatgatg |
448 |
Q |
| |
|
|||||||||||||||| ||||||| |||||| ||| ||||||| |||||||||||| || ||||||||||| |||||| ||||||||||| |||||||| |
|
|
| T |
5283551 |
tggtgatagttatccagattggttgacctttagttcagaaggttcttctgtaacttttgatgtccctcaagttgaagggtgtaacttgaagtcaatgatg |
5283452 |
T |
|
| Q |
449 |
tgcattgtctatacttcaaccccagataacataacatcaagtggccttaaaaatgtgttagtgaaaaattacacaaaggccaccattcagctctataa |
546 |
Q |
| |
|
||||||||||||||||||||||| | || |||| | || ||| ||| |||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
5283451 |
tgcattgtctatacttcaacccctggta----aaca-----tagctttagaaacgtgttagtgaaaaattacacaaaggccaccatccaactctataa |
5283363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 309 - 581
Target Start/End: Original strand, 5397962 - 5398234
Alignment:
| Q |
309 |
agaatatagatgtcaataggagtggtggttgtttgcttcctggtgatagttatccaaattggttaacctttctttcggaaggttattctgtaactttaga |
408 |
Q |
| |
|
||||||| |||| |||| ||| |||||||||||| || || | ||||||||||||||||||||||| | | ||| || |||| |||| ||||||| || |
|
|
| T |
5397962 |
agaatatcgatggcaatgggaatggtggttgtttcctccccagcgatagttatccaaattggttaacttatagttctgagggttcttctttaacttttga |
5398061 |
T |
|
| Q |
409 |
agtccctcaagtggaagggcgtaacttgaagacaatgatgtgcattgtctatacttcaaccccagataacataacatcaagtggccttaaaaatgtgtta |
508 |
Q |
| |
|
||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||| ||||||| |||||||||||||| ||||| |
|
|
| T |
5398062 |
agttcctcatgtggaagggcgtaacttgaagacaatgatgtgcattgtgtatacttcaactctggataatgtaacatctagtggccttaaaaacatgtta |
5398161 |
T |
|
| Q |
509 |
gtgaaaaattacacaaaggccaccattcagctctataagagcgaggcattagtctcctttgaagatgaggagg |
581 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||| |||| |||| |
|
|
| T |
5398162 |
gtgataaattacacaaaggccaccattcagctctataagagtgaggcgttattctcctttgaacatgaagagg |
5398234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 308 - 581
Target Start/End: Complemental strand, 5181154 - 5180881
Alignment:
| Q |
308 |
cagaatatagatgtcaataggagtggtggttgtttgcttcctggtgatagttatccaaattggttaacctttctttcggaaggttattctgtaactttag |
407 |
Q |
| |
|
|||||||| ||||||||| |||||||||| ||| || || ||||||||||||||||||||||||||||| ||| ||||||| |||||||||||| | |
|
|
| T |
5181154 |
cagaatatggatgtcaatgaaagtggtggttatttcctccccagtgatagttatccaaattggttaacctttaattctgaaggttcttctgtaacttttg |
5181055 |
T |
|
| Q |
408 |
aagtccctcaagtggaagggcgtaacttgaagacaatgatgtgcattgtctatacttcaaccccagataacataacatcaagtggccttaaaaatgtgtt |
507 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||| | ||||||||| |||||| ||| |||| |||||||||||||||||||||| |||| |
|
|
| T |
5181054 |
aagtccctttggtggaaggacgtaacttgaagacaatgatgctcgttgtctataattcaactccacataatgtaacatcaagtggccttaaaaacatgtt |
5180955 |
T |
|
| Q |
508 |
agtgaaaaattacacaaaggccaccattcagctctataagagcgaggcattagtctcctttgaagatgaggagg |
581 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||||||||||| || | |||||||| ||||||||||| |||| |
|
|
| T |
5180954 |
agttaaaaattacacaaaggctaccattcagctctataagagtgatacgttagtctcttttgaagatgaagagg |
5180881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 301 - 560
Target Start/End: Original strand, 5334090 - 5334345
Alignment:
| Q |
301 |
aattttgcagaatatagatgtcaataggagtggtggttgtttgcttcctggtgatagttatccaaattggttaacctttctttcggaaggttattctgta |
400 |
Q |
| |
|
|||||| |||||||| |||| |||| |||||||||||||||| | | |||||||||||||||||||||||| || | ||| ||||||| |||||| |
|
|
| T |
5334090 |
aattttccagaatatggatggcaatgggagtggtggttgtttcc---ccagtgatagttatccaaattggttaagctataattctgaaggttcttctgtg |
5334186 |
T |
|
| Q |
401 |
actttagaagtccctcaagtggaagggcgtaacttgaagacaatgatgtgcattgtctatacttcaaccccagataacataacatcaagtggccttaaaa |
500 |
Q |
| |
|
| || ||||| ||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
5334187 |
aaatttgaagttcctcaagtggaagggggtaacttgaagacaatgatgtgcattttctataattcaaccccagataatgt-acatcaagtggccttaaaa |
5334285 |
T |
|
| Q |
501 |
atgtgttagtgaaaaattacacaaaggccaccattcagctctataagagcgaggcattag |
560 |
Q |
| |
|
| ||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
5334286 |
acatgttagtgataaattacacaaaggccaccattcaactctataagagtgaggcattag |
5334345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 303 - 581
Target Start/End: Complemental strand, 5127017 - 5126736
Alignment:
| Q |
303 |
ttttgcagaatatagatgtcaataggagtggtggttgtttgcttcctggtgatagttatccaaattggttaacctttctttcggaaggttattctgtaac |
402 |
Q |
| |
|
|||| |||||||| |||| || | || |||||||| |||||||||||||||||||||||||| |||||||| |||| || ||||||| ||| ||||| |
|
|
| T |
5127017 |
ttttacagaatatggatgccagttggtgtggtggtagtttgcttcctggtgatagttatccatattggttagccttcaactccgaaggttcttcggtaac |
5126918 |
T |
|
| Q |
403 |
tttagaagtccctcaagtggaagggcgtaacttgaagaca---atgatgtgcattgtctatacttcaaccccagataacataacatcaagtggccttaaa |
499 |
Q |
| |
|
||| ||||| ||||||||| ||||||||| ||||||| | ||||| |||||||||||| |||||||| ||||||||||||||| |||||||| | |
|
|
| T |
5126917 |
ttttgaagtacctcaagtgaaagggcgtacgttgaagaaagtaatgatatgcattgtctattcttcaaccttggataacataacatcagatggccttaca |
5126818 |
T |
|
| Q |
500 |
aatgtgttagtgaaaaattacacaaaggccaccattcagctctataagagcgaggcattagtctcctttgaagatgaggagg |
581 |
Q |
| |
|
| |||| |||||||||||||| |||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
5126817 |
agcttgttggtgaaaaattacacgaaggccaccattcaactctataagagagaggcagcagtctcctttgaagatgaggagg |
5126736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 407 - 575
Target Start/End: Original strand, 2938923 - 2939093
Alignment:
| Q |
407 |
gaagtccctcaagtggaagggcgtaacttgaagacaatgatgtgcattgtctata--cttcaaccccagataacataacatcaagtggccttaaaaatgt |
504 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||| |||||||||||||| | |
|
|
| T |
2938923 |
gaagttcctcaagtggaagggcgtaacttgaagacaatgatgtgcattgtctatatacttaaaccccagataatgtaacatctagtggccttaaaaacat |
2939022 |
T |
|
| Q |
505 |
gttagtgaaaaattacacaaaggccaccattcagctctataagagcgaggcattagtctcctttgaagatg |
575 |
Q |
| |
|
| || |||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
2939023 |
gatattgaaaaattatataaaggccaccattcagctctataagagtgaggcattagtctccttcgaagatg |
2939093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 308 - 577
Target Start/End: Complemental strand, 5242895 - 5242623
Alignment:
| Q |
308 |
cagaatatagatgtcaataggagtggtggttgtttgcttcctggtgatagttatccaaattggttaacctttctttcggaaggttattctgtaactttag |
407 |
Q |
| |
|
|||||||| |||| ||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||| ||||||| |||||| ||||| | |
|
|
| T |
5242895 |
cagaatatggatgagaatgggagtggtggttgtttgcttcctggtgacagttatccagattggttaaccttcgattctgaaggttcttctgttacttttg |
5242796 |
T |
|
| Q |
408 |
aagtccctcaagtggaagggcgtaacttgaagacaat---gatgtgcattgtctatacttcaaccccagataacataacatcaagtggccttaaaaatgt |
504 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||| ||| || ||||||| ||||||| | |||| |||||||| ||||||| ||| | |
|
|
| T |
5242795 |
aagtccctcaagtggaagggcgaatgttgaagacaataacgatatgtgctgtctattcttcaacttcggatagtataacatctgatggccttggaaactt |
5242696 |
T |
|
| Q |
505 |
gttagtgaaaaattacacaaaggccaccattcagctctataagagcgaggcattagtctcctttgaagatgag |
577 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||| | |||||||||||||| |
|
|
| T |
5242695 |
gttagtgaaaaattacacaaaggccaccattcagctctacaagagagaggcagtagccgcctttgaagatgag |
5242623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 303 - 581
Target Start/End: Complemental strand, 5689291 - 5689010
Alignment:
| Q |
303 |
ttttgcagaatatagatgtcaataggagtggtggttgtttgcttcctggtgatagttatccaaattggttaacctttctttcggaaggttattctgtaac |
402 |
Q |
| |
|
|||| |||||||| |||| ||| || |||||||||||||| ||||| ||||||||| |||| ||||||||||||| || ||||||| ||| |||| |
|
|
| T |
5689291 |
ttttacagaatatggatgagaatgggtgtggtggttgtttgtttcctagtgatagttgtccagattggttaaccttcaattgcgaaggttcttcggtaat |
5689192 |
T |
|
| Q |
403 |
tttagaagtccctcaagtggaagggcgtaacttgaagacaatgatg---tgcattgtctatacttcaaccccagataacataacatcaagtggccttaaa |
499 |
Q |
| |
|
|| ||||||||||||||||||||||| | || |||||| ||||| ||||| | |||| || |||||| |||||||||||||||| ||||||| | |
|
|
| T |
5689191 |
gtttgaagtccctcaagtggaagggcgcactttaaagacattgatgatatgcatcgactattctacaaccctggataacataacatcaaatggccttgca |
5689092 |
T |
|
| Q |
500 |
aatgtgttagtgaaaaattacacaaaggccaccattcagctctataagagcgaggcattagtctcctttgaagatgaggagg |
581 |
Q |
| |
|
|| |||| ||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
5689091 |
aacttgttggtgaagaattacacaaaagccaccattcagctttataagagcgaggcattagtctcctttgaagatgaagagg |
5689010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 308 - 581
Target Start/End: Original strand, 5345941 - 5346217
Alignment:
| Q |
308 |
cagaatatagatgtcaataggagtggtggttgtttgcttcctggtgatagttatccaaattggttaacctttctttcggaaggttattctgtaactttag |
407 |
Q |
| |
|
|||||||| |||| ||| |||||||||||||||||||||||||||| ||||||||| |||||||||| || ||| ||||||| |||||| ||||| | |
|
|
| T |
5345941 |
cagaatatggatgagaatgggagtggtggttgtttgcttcctggtgacagttatccagattggttaactttcaattctgaaggttcttctgttacttttg |
5346040 |
T |
|
| Q |
408 |
aagtccctcaagtggaagggcgtaacttgaagacaat---gatgtgcattgtctatacttcaaccccagataacataacatcaagtggccttaaaaatgt |
504 |
Q |
| |
|
|||| ||||||||||||||||| | ||||||||||| ||| || |||||||| ||||||| | ||||| |||||||| |||||| | ||| | |
|
|
| T |
5346041 |
aagttcctcaagtggaagggcgaatgttgaagacaataacgatatgtgttgtctattcttcaacttcggataatataacatctgatggcctgagaaactt |
5346140 |
T |
|
| Q |
505 |
gttagtgaaaaattacacaaaggccaccattcagctctataagagcgaggcattagtctcctttgaagatgaggagg |
581 |
Q |
| |
|
||| |||||||||||||||||||| ||||||||||| || ||||| |||||| ||| | |||||||||||||||||| |
|
|
| T |
5346141 |
gttggtgaaaaattacacaaaggctaccattcagctatacaagagagaggcagtagccgcctttgaagatgaggagg |
5346217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 303 - 581
Target Start/End: Original strand, 5177646 - 5177927
Alignment:
| Q |
303 |
ttttgcagaatatagatgtcaataggagtggtggttgtttgcttcctggtgatagttatccaaattggttaacctttctttcggaaggttattctgtaac |
402 |
Q |
| |
|
|||| |||||||| |||| ||| || |||||||||||||| ||||| ||||||||| |||| ||||||||||||| || ||||||| ||| |||| |
|
|
| T |
5177646 |
ttttacagaatatggatgagaatgggtgtggtggttgtttgtttcctagtgatagttgtccagattggttaaccttcaattgcgaaggttcttcggtaat |
5177745 |
T |
|
| Q |
403 |
tttagaagtccctcaagtggaagggcgtaacttgaagacaatgatg---tgcattgtctatacttcaaccccagataacataacatcaagtggccttaaa |
499 |
Q |
| |
|
|| ||||||||||||||||||||| | | || |||||||||||| ||||||| |||| ||||||||| ||||| |||||||||| ||||||| | |
|
|
| T |
5177746 |
gtttgaagtccctcaagtggaagggtgcactttaaagacaatgatgatatgcattgactattcttcaaccctggataatataacatcaaatggccttgca |
5177845 |
T |
|
| Q |
500 |
aatgtgttagtgaaaaattacacaaaggccaccattcagctctataagagcgaggcattagtctcctttgaagatgaggagg |
581 |
Q |
| |
|
|| |||| || || ||||||||||| |||||||||||||| |||||||| |||||||||| ||||||||||||||| |||| |
|
|
| T |
5177846 |
aacttgttggttaagaattacacaaaagccaccattcagctttataagagagaggcattagcctcctttgaagatgaagagg |
5177927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 386 - 581
Target Start/End: Complemental strand, 5065754 - 5065556
Alignment:
| Q |
386 |
gaaggttattctgtaactttagaagtccctcaagtggaagggcgtaacttgaagacaatgatg---tgcattgtctatacttcaaccccagataacataa |
482 |
Q |
| |
|
||||||| |||||||||||| |||||||||||| || ||||||||| ||||||||||| ||| |||||||||||| |||||||||| ||||||||| |
|
|
| T |
5065754 |
gaaggttcttctgtaacttttgaagtccctcaaatgaaagggcgtatgttgaagacaataatgatatgcattgtctattcttcaaccccggataacatag |
5065655 |
T |
|
| Q |
483 |
catcaagtggccttaaaaatgtgttagtgaaaaattacacaaaggccaccattcagctctataagagcgaggcattagtctcctttgaagatgaggagg |
581 |
Q |
| |
|
|||| |||||| | |||| |||| || |||||||||||||| |||||||||||||||||||||| ||||| ||| ||||||||||||||||||||| |
|
|
| T |
5065654 |
catctgatggcctcacaaatttgttggtaaaaaattacacaaaatccaccattcagctctataagagagaggcgttaatctcctttgaagatgaggagg |
5065556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 308 - 581
Target Start/End: Original strand, 5279476 - 5279752
Alignment:
| Q |
308 |
cagaatatagatgtcaataggagtggtggttgtttgcttcctggtgatagttatccaaattggttaacctttctttcggaaggttattctgtaactttag |
407 |
Q |
| |
|
|||||||| |||| ||| || |||||||||||||| |||| ||||||||| |||| ||||||||||||| || ||||||| ||| |||| || | |
|
|
| T |
5279476 |
cagaatatggatgagaatgggtgtggtggttgtttgtttccaagtgatagttgtccagattggttaaccttcaattgcgaaggttcttcggtaatgtttg |
5279575 |
T |
|
| Q |
408 |
aagtccctcaagtggaagggcgtaacttgaagaca---atgatgtgcattgtctatacttcaaccccagataacataacatcaagtggccttaaaaatgt |
504 |
Q |
| |
|
|||||||||||||||||||| | | || |||||| ||||| ||||||| |||| ||||||||| ||||| |||||||||| ||||||| ||| | |
|
|
| T |
5279576 |
aagtccctcaagtggaagggtgcactttaaagacattgatgatatgcattgactattcttcaaccctggataatataacatcaaatggccttgcaaactt |
5279675 |
T |
|
| Q |
505 |
gttagtgaaaaattacacaaaggccaccattcagctctataagagcgaggcattagtctcctttgaagatgaggagg |
581 |
Q |
| |
|
||| ||||| ||||||||||| |||||||||||||| |||||||| |||||||||| ||||||||||||||| |||| |
|
|
| T |
5279676 |
gttggtgaagaattacacaaaagccaccattcagctttataagagagaggcattagcctcctttgaagatgaagagg |
5279752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 309 - 579
Target Start/End: Complemental strand, 23127689 - 23127419
Alignment:
| Q |
309 |
agaatatagatgtcaataggagtggtggttgtttgcttcctggtgatagttatccaaattggttaacctttctttcggaaggttattctgtaactttaga |
408 |
Q |
| |
|
||||||||||||||||| | ||||||||||||| || ||| |||||||||||| | |||||| || || ||||||| |||||||| ||| || |
|
|
| T |
23127689 |
agaatatagatgtcaatggatgtggtggttgttttctcactgaagatagttatccagactggttaggtttcggttttgaaggttcttctgtaagttttga |
23127590 |
T |
|
| Q |
409 |
agtccctcaagtggaagggcgtaacttgaagacaatgatgtgcattgtctatacttcaaccccagataacataacatcaagtggccttaaaaatgtgtta |
508 |
Q |
| |
|
|| |||||||||||||||| |||| |||||||||| ||||| ||||| |||||||||||||||||||||| || || |||| ||||||| ||||| |
|
|
| T |
23127589 |
agctcctcaagtggaagggcataacgtgaagacaataatgtgtgttgtcaatacttcaaccccagataacattacctcggatggcgttaaaaacgtgttg |
23127490 |
T |
|
| Q |
509 |
gtgaaaaattacacaaaggccaccattcagctctataagagcgaggcattagtctcctttgaagatgagga |
579 |
Q |
| |
|
|| |||||||||||||||| ||||||||| |||||||||| ||| |||||||||| || ||||||||||| |
|
|
| T |
23127489 |
gtaaaaaattacacaaagggtaccattcagatctataagagagagacattagtctcgttcgaagatgagga |
23127419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 340 - 471
Target Start/End: Complemental strand, 5256498 - 5256367
Alignment:
| Q |
340 |
tttgcttcctggtgatagttatccaaattggttaacctttctttcggaaggttattctgtaactttagaagtccctcaagtggaagggcgtaacttgaag |
439 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| | ||| ||||||| |||||||||||| |||||||| |||| |||||||||||||||| | |
|
|
| T |
5256498 |
tttgcttcctggtgatagtcatccaaattggttaacctatagttctgaaggttcttctgtaacttttgaagtccccgaagttgaagggcgtaacttgatg |
5256399 |
T |
|
| Q |
440 |
acaatgatgtgcattgtctatacttcaacccc |
471 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
5256398 |
tcaatgatgtgcattgtctatacttcaacccc |
5256367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 350 - 581
Target Start/End: Complemental strand, 5073020 - 5072789
Alignment:
| Q |
350 |
ggtgatagttatccaaattggttaacctttctttcggaaggttattctgtaactttagaagtccctcaagtggaagggcgtaacttgaagacaatgatgt |
449 |
Q |
| |
|
|||||| |||| ||||||||||| ||||| || || |||| ||| |||| || ||||||||||||||||||||||| | |||||||||||||| | |
|
|
| T |
5073020 |
ggtgatggttacccaaattggttttcctttaattacgatggttgttcggtaaaatttgaagtccctcaagtggaagggcgcatattgaagacaatgatat |
5072921 |
T |
|
| Q |
450 |
gcattgtctatacttcaaccccagataacataacatcaagtggccttaaaaatgtgttagtgaaaaattacacaaaggccaccattcagctctataagag |
549 |
Q |
| |
|
|| |||||||| ||||| | ||| |||| || |||| ||||||||||| || | |||||||||||||| || ||||||||||| || |||||||| |
|
|
| T |
5072920 |
gcgttgtctattcttcaccaccaaataatgtagtatcagacggccttaaaaacttgatggtgaaaaattacactaaagccaccattcaactatataagag |
5072821 |
T |
|
| Q |
550 |
cgaggcattagtctcctttgaagatgaggagg |
581 |
Q |
| |
|
||||||||||||||||| ||||||| |||| |
|
|
| T |
5072820 |
agaggcattagtctccttcaaagatgatgagg |
5072789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 386 - 543
Target Start/End: Original strand, 5253539 - 5253699
Alignment:
| Q |
386 |
gaaggttattctgtaactttagaagtccctcaagtggaagggcgtaacttgaagacaat---gatgtgcattgtctatacttcaaccccagataacataa |
482 |
Q |
| |
|
||||||| ||||||| |||| ||||||||||| |||||||||||| ||||||||||| ||| |||||||||| |||||||||||||||||| || |
|
|
| T |
5253539 |
gaaggttcttctgtaccttttaaagtccctcaattggaagggcgtatgttgaagacaataaagataagcattgtctaatcttcaaccccagataacacaa |
5253638 |
T |
|
| Q |
483 |
catcaagtggccttaaaaatgtgttagtgaaaaattacacaaaggccaccattcagctcta |
543 |
Q |
| |
|
|||| |||| | | |||| |||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
5253639 |
catctgatggcttcacaaatttgttggtaaaaaattacacaaaggccaccattcagctcta |
5253699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 106 - 243
Target Start/End: Complemental strand, 5181370 - 5181236
Alignment:
| Q |
106 |
ttgttactatcgttattttccctcactattattttggtatgtatggagttcataagtaggactgatagttggttttatgaatccaagcaaatatttctct |
205 |
Q |
| |
|
||||||||||| |||| |||||||| |||| ||||| |||||||| | | ||| ||| ||||||| |||||||||||||||||||| |||||| | |
|
|
| T |
5181370 |
ttgttactatcattatcttccctcaatatt---ttggttggtatggagcttttcagttggattgatagtctgttttatgaatccaagcaaagatttcttt |
5181274 |
T |
|
| Q |
206 |
gtaacgtcaaaatatgattaattaccttatgaggaaaa |
243 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
5181273 |
gtaacgtcaaaatatgattaattgccttatgagaaaaa |
5181236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 57 - 263
Target Start/End: Original strand, 5371768 - 5371970
Alignment:
| Q |
57 |
ctgttacaaacttacaggcttcaaaaagcgcattttagagcggtaaaatttgttactatcgttattttccctcactattattttggtatgtatggagttc |
156 |
Q |
| |
|
||||||||||||||||| ||||||| ||| ||||||||| ||||| | ||| | |||| |||| ||||||||||||| |||| |||||||||| |
|
|
| T |
5371768 |
ctgttacaaacttacagtcttcaaatagcacattttagattggtaacctatgtcagtatcattatcttccctcactatt---ttggatggtatggagttt |
5371864 |
T |
|
| Q |
157 |
ataagtaggactgatagttggttttatgaatccaagcaaatatttctctgtaacgtcaaaatatgattaattaccttatgaggaaaagttaaatctttaa |
256 |
Q |
| |
|
||||| |||||||| || |||||| || || | | |||||||| | |||||| ||||||||||||||||||||||| ||||||| ||| ||||| || |
|
|
| T |
5371865 |
ttaagtgggactgattgtatgttttacgagtcaatgaaaatatttatttgtaacaacaaaatatgattaattaccttataaggaaaa-ttatatcttaaa |
5371963 |
T |
|
| Q |
257 |
ttgttga |
263 |
Q |
| |
|
||||||| |
|
|
| T |
5371964 |
ttgttga |
5371970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 413 - 581
Target Start/End: Complemental strand, 5124719 - 5124550
Alignment:
| Q |
413 |
cctcaagtggaagggcgtaacttgaagacaatgatgtgcattgtctatacttcaaccccagataa-cataacatcaagtggccttaaaaatgtgttagtg |
511 |
Q |
| |
|
||||||||| |||| |||||||| |||||||| ||||||||||||||| | | || ||| | || |||| |||| ||||||||||| |||| | ||| |
|
|
| T |
5124719 |
cctcaagtgtaaggacgtaacttaaagacaataatgtgcattgtctattcattgactccaaaaaaacatagcatcggatggccttaaaactgtgatggtg |
5124620 |
T |
|
| Q |
512 |
aaaaattacacaaaggccaccattcagctctataagagcgaggcattagtctcctttgaagatgaggagg |
581 |
Q |
| |
|
||||||||||| |||| |||||||| ||||||||||| || ||||||||| | ||| |||| ||||||| |
|
|
| T |
5124619 |
aaaaattacacgaaggggaccattcaactctataagagagatgcattagtcgcatttcaagaggaggagg |
5124550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #30
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 166 - 275
Target Start/End: Complemental strand, 5256686 - 5256578
Alignment:
| Q |
166 |
actgatagttggttttatgaatccaagcaaatatttctctgtaacgtcaaaatatgattaattaccttatgaggaaaagttaaatctttaattgttgaat |
265 |
Q |
| |
|
||||||||| |||||||||||||||| |||| ||| | ||||||| |||||||||||||| |||||||| ||| |||||| || || ||||||| ||| |
|
|
| T |
5256686 |
actgatagtctgttttatgaatccaagaaaatctttatttgtaacgccaaaatatgattaactaccttataagg-gaagttatatattcaattgttcaat |
5256588 |
T |
|
| Q |
266 |
aaatgataag |
275 |
Q |
| |
|
|||||||||| |
|
|
| T |
5256587 |
aaatgataag |
5256578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #31
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 503 - 546
Target Start/End: Complemental strand, 5256296 - 5256253
Alignment:
| Q |
503 |
gtgttagtgaaaaattacacaaaggccaccattcagctctataa |
546 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
5256296 |
gtgttagtgaaaaattacacaaaggccaccatccaactctataa |
5256253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 151; Significance: 1e-79; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 303 - 581
Target Start/End: Complemental strand, 47985778 - 47985500
Alignment:
| Q |
303 |
ttttgcagaatatagatgtcaataggagtggtggttgtttgcttcctggtgatagttatccaaattggttaacctttctttcggaaggttattctgtaac |
402 |
Q |
| |
|
|||| |||||||| | ||| ||| |||||| | |||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||| ||| ||||| |
|
|
| T |
47985778 |
ttttacagaatatggctgttaatgggagtgattgttgtttgctccctggtgatagttatccaaattggttaacctttaattctgaaggttcttcggtaac |
47985679 |
T |
|
| Q |
403 |
tttagaagtccctcaagtggaagggcgtaacttgaagacaatgatgtgcattgtctatacttcaaccccagataacataacatcaagtggccttaaaaat |
502 |
Q |
| |
|
||| |||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||| |
|
|
| T |
47985678 |
ttttgaagtccctcaagtggaaaggcataacttaaagacaatgatgtgcattgtctatacttcaacctcagatgacataacatcagatggccttaaaaac |
47985579 |
T |
|
| Q |
503 |
gtgttagtgaaaaattacacaaaggccaccattcagctctataagagcgaggcattagtctcctttgaagatgaggagg |
581 |
Q |
| |
|
|||||||||| |||| |||||| |||| |||||| ||||||||||| ||| ||||| ||||||||| ||||||||||| |
|
|
| T |
47985578 |
gtgttagtgataaatcacacaagagccatcattcaactctataagagtgagacattaatctcctttggagatgaggagg |
47985500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 303 - 581
Target Start/End: Complemental strand, 47995065 - 47994787
Alignment:
| Q |
303 |
ttttgcagaatatagatgtcaataggagtggtggttgtttgcttcctggtgatagttatccaaattggttaacctttctttcggaaggttattctgtaac |
402 |
Q |
| |
|
|||| |||||||| | ||| ||| |||||| | |||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||| ||| ||||| |
|
|
| T |
47995065 |
ttttacagaatatggctgttaatgggagtgattgttgtttgctccctggtgatagttatccaaattggttaacctttaattctgaaggttcttcggtaac |
47994966 |
T |
|
| Q |
403 |
tttagaagtccctcaagtggaagggcgtaacttgaagacaatgatgtgcattgtctatacttcaaccccagataacataacatcaagtggccttaaaaat |
502 |
Q |
| |
|
||| |||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||| |
|
|
| T |
47994965 |
ttttgaagtccctcaagtggaaaggcataacttaaagacaatgatgtgcattgtctatacttcaacctcagatgacataacatcagatggccttaaaaac |
47994866 |
T |
|
| Q |
503 |
gtgttagtgaaaaattacacaaaggccaccattcagctctataagagcgaggcattagtctcctttgaagatgaggagg |
581 |
Q |
| |
|
|||||||||| |||| |||||| |||| |||||| ||||||||||| ||| ||||| ||||||||| ||||||||||| |
|
|
| T |
47994865 |
gtgttagtgataaatcacacaagagccatcattcaactctataagagtgagacattaatctcctttggagatgaggagg |
47994787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 303 - 581
Target Start/End: Complemental strand, 48004352 - 48004074
Alignment:
| Q |
303 |
ttttgcagaatatagatgtcaataggagtggtggttgtttgcttcctggtgatagttatccaaattggttaacctttctttcggaaggttattctgtaac |
402 |
Q |
| |
|
|||| |||||||| | ||| ||| |||||| | |||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||| ||| ||||| |
|
|
| T |
48004352 |
ttttacagaatatggctgttaatgggagtgattgttgtttgctccctggtgatagttatccaaattggttaacctttaattctgaaggttcttcggtaac |
48004253 |
T |
|
| Q |
403 |
tttagaagtccctcaagtggaagggcgtaacttgaagacaatgatgtgcattgtctatacttcaaccccagataacataacatcaagtggccttaaaaat |
502 |
Q |
| |
|
||| |||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||| |
|
|
| T |
48004252 |
ttttgaagtccctcaagtggaaaggcataacttaaagacaatgatgtgcattgtctatacttcaacctcagatgacataacatcagatggccttaaaaac |
48004153 |
T |
|
| Q |
503 |
gtgttagtgaaaaattacacaaaggccaccattcagctctataagagcgaggcattagtctcctttgaagatgaggagg |
581 |
Q |
| |
|
|||||||||| |||| |||||| |||| |||||| ||||||||||| ||| ||||| ||||||||| ||||||||||| |
|
|
| T |
48004152 |
gtgttagtgataaatcacacaagagccatcattcaactctataagagtgagacattaatctcctttggagatgaggagg |
48004074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 303 - 581
Target Start/End: Complemental strand, 48013637 - 48013359
Alignment:
| Q |
303 |
ttttgcagaatatagatgtcaataggagtggtggttgtttgcttcctggtgatagttatccaaattggttaacctttctttcggaaggttattctgtaac |
402 |
Q |
| |
|
|||| |||||||| | ||| ||| |||||| | |||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||| ||| ||||| |
|
|
| T |
48013637 |
ttttacagaatatggctgttaatgggagtgattgttgtttgctccctggtgatagttatccaaattggttaacctttaattctgaaggttcttcggtaac |
48013538 |
T |
|
| Q |
403 |
tttagaagtccctcaagtggaagggcgtaacttgaagacaatgatgtgcattgtctatacttcaaccccagataacataacatcaagtggccttaaaaat |
502 |
Q |
| |
|
||| |||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||| |
|
|
| T |
48013537 |
ttttgaagtccctcaagtggaaaggcataacttaaagacaatgatgtgcattgtctatacttcaacctcagatgacataacatcagatggccttaaaaac |
48013438 |
T |
|
| Q |
503 |
gtgttagtgaaaaattacacaaaggccaccattcagctctataagagcgaggcattagtctcctttgaagatgaggagg |
581 |
Q |
| |
|
|||||||||| |||| |||||| |||| |||||| ||||||||||| ||| ||||| ||||||||| ||||||||||| |
|
|
| T |
48013437 |
gtgttagtgataaatcacacaagagccatcattcaactctataagagtgagacattaatctcctttggagatgaggagg |
48013359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 103; Significance: 6e-51; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 331 - 581
Target Start/End: Complemental strand, 36213278 - 36213028
Alignment:
| Q |
331 |
tggtggttgtttgcttcctggtgatagttatccaaattggttaacctttctttcggaaggttattctgtaactttagaagtccctcaagtggaagggcgt |
430 |
Q |
| |
|
||||||||||||||| ||||||||| |||||| ||||||||||||| || |||||| |||||||| ||| || ||||||| |||||| || ||| |
|
|
| T |
36213278 |
tggtggttgtttgctccctggtgatcattatcctgattggttaaccttcaattgcaaaggttcttctgtaatttttgatgtccctcgagtggatggacgt |
36213179 |
T |
|
| Q |
431 |
aacttgaagacaatgatgtgcattgtctatacttcaaccccagataacataacatcaagtggccttaaaaatgtgttagtgaaaaattacacaaaggcca |
530 |
Q |
| |
|
||||| |||||||| ||||| ||||||||| ||||||| ||||| |||||| ||||| ||| |||||||| ||| | || |||||| |||||||||| | |
|
|
| T |
36213178 |
aacttaaagacaataatgtgtattgtctattcttcaactccagaaaacatagcatcagatggacttaaaaacgtgatggtaaaaaatcacacaaaggcta |
36213079 |
T |
|
| Q |
531 |
ccattcagctctataagagcgaggcattagtctcctttgaagatgaggagg |
581 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
36213078 |
ccattcagatctataagagagaggcattagtctcatttgaagatgaggagg |
36213028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 389 - 559
Target Start/End: Original strand, 18936453 - 18936623
Alignment:
| Q |
389 |
ggttattctgtaactttagaagtccctcaagtggaagggcgtaacttgaagacaatgatgtgcattgtctatacttcaaccccagataacataacatcaa |
488 |
Q |
| |
|
|||| |||||||||||| ||||| || |||||||| ||||||| |||||| || || |||||| |||||||| |||| | || | | | ||||||||| |
|
|
| T |
18936453 |
ggttcttctgtaactttcgaagttccacaagtggatgggcgtagcttgaaaaccatcatgtgcgttgtctattcttcttctcctggtgatataacatcag |
18936552 |
T |
|
| Q |
489 |
gtggccttaaaaatgtgttagtgaaaaattacacaaaggccaccattcagctctataagagcgaggcatta |
559 |
Q |
| |
|
||||||||| | |||| |||| ||||| ||||||| ||||||||||||||||||||| || |||||| |
|
|
| T |
18936553 |
aaggccttaaagttttgttggtgataaattgcacaaagaacaccattcagctctataagagagacgcatta |
18936623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 389 - 559
Target Start/End: Complemental strand, 34723590 - 34723420
Alignment:
| Q |
389 |
ggttattctgtaactttagaagtccctcaagtggaagggcgtaacttgaagacaatgatgtgcattgtctatacttcaaccccagataacataacatcaa |
488 |
Q |
| |
|
|||| |||||||||||| ||||| || ||||||| ||||||| |||||| ||||| ||||||| ||||||| |||| | |||| | | ||||||||| |
|
|
| T |
34723590 |
ggttcttctgtaactttcgaagttccaaaagtggatgggcgtagcttgaaaacaatcatgtgcactgtctattcttcttctccaggtgatataacatcag |
34723491 |
T |
|
| Q |
489 |
gtggccttaaaaatgtgttagtgaaaaattacacaaaggccaccattcagctctataagagcgaggcatta |
559 |
Q |
| |
|
||||||||| |||| |||| ||||| |||||| ||||||||||||| ||||||| || |||||| |
|
|
| T |
34723490 |
aaggccttaaagtattgttggtgataaattgtacaaagaacaccattcagctccataagagtgacgcatta |
34723420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 103; Significance: 6e-51; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 386 - 580
Target Start/End: Complemental strand, 4319604 - 4319410
Alignment:
| Q |
386 |
gaaggttattctgtaactttagaagtccctcaagtggaagggcgtaacttgaagacaatgatgtgcattgtctatacttcaaccccagataacataacat |
485 |
Q |
| |
|
||||||| |||||||| ||| |||||||||||||||||||| |||| |||||||||||| ||||||||||||||| |||||| |||| | ||||||||| |
|
|
| T |
4319604 |
gaaggttcttctgtaatttttgaagtccctcaagtggaaggacgtagcttgaagacaataatgtgcattgtctattcttcaagcccatacgacataacat |
4319505 |
T |
|
| Q |
486 |
caagtggccttaaaaatgtgttagtgaaaaattacacaaaggccaccattcagctctataagagcgaggcattagtctcctttgaagatgaggag |
580 |
Q |
| |
|
|| ||||||| ||||||||||||||| |||| |||||||| |||||||||| ||||||||||| || |||||| |||||||||| |||||||| |
|
|
| T |
4319504 |
cagatggccttgaaaatgtgttagtgataaatcacacaaagaccaccattcaactctataagagagaagcattatcctcctttgaaaatgaggag |
4319410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 387 - 580
Target Start/End: Original strand, 4336896 - 4337089
Alignment:
| Q |
387 |
aaggttattctgtaactttagaagtccctcaagtggaagggcgtaacttgaagacaatgatgtgcattgtctatacttcaaccccagataacataacatc |
486 |
Q |
| |
|
||||||||||||||| ||| ||||||||||| |||||||| |||| |||||||||||||||||||||||||||| |||||| |||| || |||||||||| |
|
|
| T |
4336896 |
aaggttattctgtaaattttgaagtccctcatgtggaaggacgtagcttgaagacaatgatgtgcattgtctattcttcaagcccaaatgacataacatc |
4336995 |
T |
|
| Q |
487 |
aagtggccttaaaaatgtgttagtgaaaaattacacaaaggccaccattcagctctataagagcgaggcattagtctcctttgaagatgaggag |
580 |
Q |
| |
|
| ||||||| |||||||||| |||| |||| |||||||| |||||||||| |||| |||||| ||||||||| ||||| ||| |||||||| |
|
|
| T |
4336996 |
agatggccttcaaaatgtgttggtgataaatcacacaaagaccaccattcaactctttaagagagaggcattatcgtccttcgaaaatgaggag |
4337089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 387 - 555
Target Start/End: Original strand, 4362546 - 4362714
Alignment:
| Q |
387 |
aaggttattctgtaactttagaagtccctcaagtggaagggcgtaacttgaagacaatgatgtgcattgtctatacttcaaccccagataacataacatc |
486 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||| ||| |||||||||||| ||||||||||||||| |||||| |||| || |||||||||| |
|
|
| T |
4362546 |
aaggttattctgtaatttttgaagtccctcaagtggaaggatgtagcttgaagacaataatgtgcattgtctattcttcaagcccatatgacataacatc |
4362645 |
T |
|
| Q |
487 |
aagtggccttaaaaatgtgttagtgaaaaattacacaaaggccaccattcagctctataagagcgaggc |
555 |
Q |
| |
|
| |||||||| ||||||||| |||| |||| |||||||| |||||||||| ||||||||||| ||||| |
|
|
| T |
4362646 |
agatggccttagaaatgtgttggtgataaatcacacaaagaccaccattcaactctataagagagaggc |
4362714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 387 - 579
Target Start/End: Complemental strand, 4122945 - 4122753
Alignment:
| Q |
387 |
aaggttattctgtaactttagaagtccctcaagtggaagggcgtaacttgaagacaatgatgtgcattgtctatacttcaaccccagataacataacatc |
486 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||| | |||| |||| || |||| |||| |
|
|
| T |
4122945 |
aaggttattctgttgtttttgaagtccctcaagtggaaggacgtagcttgaagacaatgatgtgcattgtctattcatcaagcccaaatggcatagcatc |
4122846 |
T |
|
| Q |
487 |
aagtggccttaaaaatgtgttagtgaaaaattacacaaaggccaccattcagctctataagagcgaggcattagtctcctttgaagatgagga |
579 |
Q |
| |
|
| ||||||| |||||||||| |||| |||| |||||||| |||||||||| ||||||||||| ||||| ||| |||||| ||| ||||||| |
|
|
| T |
4122845 |
agttggccttcaaaatgtgttggtgataaatcacacaaagaccaccattcaactctataagagagaggcgttatcctccttagaaaatgagga |
4122753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 330 - 555
Target Start/End: Original strand, 4346293 - 4346525
Alignment:
| Q |
330 |
gtggtggttgtttgcttcctggtgatagttatccaaattggttaacctttctttcggaaggttattctgtaactttagaagtccctcaagtggaagggcg |
429 |
Q |
| |
|
||||| ||| |||||| || ||||||| ||| |||||||||| ||| || || ||||||||||||||| || |||||||||||||||||||| | |
|
|
| T |
4346293 |
gtggtagttttttgctccccggtgataattacccaaattggtcaactttcaactccaaaggttattctgtaatctttgaagtccctcaagtggaaggaca |
4346392 |
T |
|
| Q |
430 |
taacttgaagacaatgatgtgcattgtctatacttcaaccccagataacataacatca------ag-tggccttaaaaatgtgttagtgaaaaattacac |
522 |
Q |
| |
|
|| |||||||||||| ||||||||||||||| |||||| ||||||| ||||||||||| || |||||||||||||||||| |||| |||| |||| |
|
|
| T |
4346393 |
tagcttgaagacaataatgtgcattgtctattcttcaagcccagatgacataacatcagacatcagatggccttaaaaatgtgttggtgataaatcacac |
4346492 |
T |
|
| Q |
523 |
aaaggccaccattcagctctataagagcgaggc |
555 |
Q |
| |
|
|||| |||||||||| ||||||||||| ||||| |
|
|
| T |
4346493 |
aaagaccaccattcaactctataagagagaggc |
4346525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 490 - 580
Target Start/End: Complemental strand, 4132813 - 4132723
Alignment:
| Q |
490 |
tggccttaaaaatgtgttagtgaaaaattacacaaaggccaccattcagctctataagagcgaggcattagtctcctttgaagatgaggag |
580 |
Q |
| |
|
|||||| ||||||||||| |||| |||| |||| ||| | |||||||||||||||||||| |||||||| | |||||||||| |||||||| |
|
|
| T |
4132813 |
tggcctaaaaaatgtgttggtgataaatcacacgaagactaccattcagctctataagagagaggcattcgcctcctttgaaaatgaggag |
4132723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 386 - 581
Target Start/End: Original strand, 25568827 - 25569028
Alignment:
| Q |
386 |
gaaggttattctgtaactttagaagtccctcaagtggaagggcgtaacttgaagacaatgatgtgcattgtctatacttcaaccccagataacataacat |
485 |
Q |
| |
|
||||||| ||| |||| ||| ||||| |||| ||||||||||||| |||||| |||||||| |||||||| || ||| ||| | ||||||| ||| |
|
|
| T |
25568827 |
gaaggttcttcagtaatttttgaagtacctcgagtggaagggcgtgtcttgaaaacaatgatttgcattgttgattcttggacctatgctaacatagcat |
25568926 |
T |
|
| Q |
486 |
ca-----ag-tggccttaaaaatgtgttagtgaaaaattacacaaaggccaccattcagctctataagagcgaggcattagtctcctttgaagatgagga |
579 |
Q |
| |
|
|| || ||||||| ||||||| | |||||||||||||| ||| ||||||||||| |||| ||||| ||||||||||| ||||||||| | ||||| |
|
|
| T |
25568927 |
catattcagatggccttcaaaatgtcatggtgaaaaattacaccaagtccaccattcaggtctacaagagagaggcattagtttcctttgaaaacgagga |
25569026 |
T |
|
| Q |
580 |
gg |
581 |
Q |
| |
|
|| |
|
|
| T |
25569027 |
gg |
25569028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 394 - 465
Target Start/End: Complemental strand, 7884452 - 7884381
Alignment:
| Q |
394 |
ttctgtaactttagaagtccctcaagtggaagggcgtaacttgaagacaatgatgtgcattgtctatacttc |
465 |
Q |
| |
|
|||||||||||| ||||| ||||||||||| |||||| ||||||||||| |||||||||| |||| |||| |
|
|
| T |
7884452 |
ttctgtaactttcgaagtacctcaagtggacgggcgttctttgaagacaatcatgtgcattgcctattcttc |
7884381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 330 - 579
Target Start/End: Complemental strand, 8232 - 7986
Alignment:
| Q |
330 |
gtggtggttgtttgcttcctggtgatagttatccaaattggttaacctttctttcggaaggttattctgtaactttagaagtccctcaagtggaagggcg |
429 |
Q |
| |
|
||||||||||| | || || ||||||||||||||||| ||||||| ||| || || |||| |||||||| ||| | | |||||||||||||| || |
|
|
| T |
8232 |
gtggtggttgtgttctcccgggtgatagttatccaaactggttaagcttcaattgtgatggttcttctgtaatttttaatgcccctcaagtggaagagca |
8133 |
T |
|
| Q |
430 |
taacttgaagacaatgatgtgcattgtctatacttcaaccccagataacataacatcaagtggccttaaaaatgtgttagtgaaaaattacacaaaggcc |
529 |
Q |
| |
|
|||||| ||| || |||||||||||| || ||||||| | |||||||||||| || ||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
8132 |
taacttaaagtcattgatgtgcattgcct---cttcaactgcggataacataacaccagatggtcttaaaaatgtgttagtgaaaaattacacaaaggcc |
8036 |
T |
|
| Q |
530 |
accattcagctctataagagcgaggcattagtctcctttgaagatgagga |
579 |
Q |
| |
|
||||||||| |||||||||| || |||||| |||||| | |||||||| |
|
|
| T |
8035 |
accattcagatctataagagtgaaacattagcttcctttaaggatgagga |
7986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 334 - 549
Target Start/End: Complemental strand, 22583644 - 22583426
Alignment:
| Q |
334 |
tggttgtttgcttcctggtgatagttatccaaattggttaacctttctttcggaaggttattctgtaactttagaagtccctcaagtggaagggcgtaac |
433 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| ||| || |||||| |||||||||||| |||||||| |||| ||||||||| |
|
|
| T |
22583644 |
tggttgtttgcttcctggtgataattatccaaattggttaaacttcaattgccaaggttcttctgtaacttttaaagtccctgtagtgaaagggcgtatg |
22583545 |
T |
|
| Q |
434 |
ttgaagacaatgatg---tgcattgtctatacttcaaccccagataacataacatcaagtggccttaaaaatgtgttagtgaaaaattacacaaaggcca |
530 |
Q |
| |
|
|||||| |||| ||| |||||||||||| |||||||||| |||||||||| ||| ||||| || | |||| ||||||||| | |||||||||| |
|
|
| T |
22583544 |
ttgaagtcaataatgatctgcattgtctattcttcaaccccggataacataagatccgatggccctacagccttgttggtgaaaaatcatacaaaggcca |
22583445 |
T |
|
| Q |
531 |
ccattcagctctataagag |
549 |
Q |
| |
|
|||||||| |||| ||||| |
|
|
| T |
22583444 |
ccattcagttctacaagag |
22583426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 350 - 524
Target Start/End: Original strand, 8879486 - 8879660
Alignment:
| Q |
350 |
ggtgatagttatccaaattggttaacctttctttcggaaggttattctgtaactttagaagtccctcaagtggaagggcgtaacttgaagacaatgatgt |
449 |
Q |
| |
|
||||||| |||||||||||||||||| || || |||||| || ||||||||| |||| |||||||| |||||| | ||||||||| | ||||||| |
|
|
| T |
8879486 |
ggtgataattatccaaattggttaactttcagttgtgaaggtccttgtgtaacttttaaagttcctcaagttgaagggagaaacttgaagtcgatgatgt |
8879585 |
T |
|
| Q |
450 |
gcattgtctatacttcaaccccagataacataacatcaagtggccttaaaaatgtgttagtgaaaaattacacaa |
524 |
Q |
| |
|
||||||||||||| |||||||||||||||| || |||| ||| || |||||| |||| || | |||| |||||| |
|
|
| T |
8879586 |
gcattgtctatacatcaaccccagataacacaatatcagatggactaaaaaatatgttggttataaatcacacaa |
8879660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0286 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 579
Target Start/End: Original strand, 7929 - 7994
Alignment:
| Q |
514 |
aaattacacaaaggccaccattcagctctataagagcgaggcattagtctcctttgaagatgagga |
579 |
Q |
| |
|
||||||||||||||| ||||||||| |||||| || || |||||| ||||||||| |||||||| |
|
|
| T |
7929 |
aaattacacaaaggcaaccattcaggcctataaaagagatacattagcctcctttgaggatgagga |
7994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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