View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8701_high_11 (Length: 323)
Name: NF8701_high_11
Description: NF8701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8701_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 20 - 312
Target Start/End: Complemental strand, 45099319 - 45099027
Alignment:
| Q |
20 |
accctttggagaacttggattcctgatgaggattatttggtttttaaggaagcagctaaacatgcagtaagcactcatacacctgattaccagaagggag |
119 |
Q |
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| T |
45099319 |
accctttggagaacttggattcctgatgaggattatttggtttttaaggaagcagctaaacatgcagtaagcactcatacacctgattaccagaagggag |
45099220 |
T |
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| Q |
120 |
gtgctactccagagatcgcacctgaaaatgtttacatgactgctcaacagatgaatagggaaaactcaagtttagcttcaaggtttaatataacatggaa |
219 |
Q |
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| T |
45099219 |
gtgctactccagagatcgcgcctgaaaatgtttacatgactgctcaacagatgaatagggaaaactcaagtttagcttcaaggtttaatataacatggaa |
45099120 |
T |
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| Q |
220 |
ttttcctgtggctcgtgatggcgtttcacatttgattcggttgcatttttgtgatattgttagtacttcgctcaacttgctttactttgatgt |
312 |
Q |
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| T |
45099119 |
ttttcctgtggctcgtgatggcgtttcacatttgattcggttgcatttttgtgatattgttagtacttcgctcaacttgctttactttgatgt |
45099027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 20 - 312
Target Start/End: Original strand, 17348698 - 17348993
Alignment:
| Q |
20 |
accctttggagaacttggattcctgatgaggattatttggtttttaaggaagcagctaaacatgcagtaagcactcatacacctgattaccagaagggag |
119 |
Q |
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|||||||||||||| |||||||||||| |||||| | ||||||||||||| |||||||| || ||| |||||||| ||||| ||||| ||||| || | |
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| T |
17348698 |
accctttggagaacatggattcctgataaggattttctggtttttaaggatgcagctaaggctgtagtgagcactcacacaccagattatcagaaagggg |
17348797 |
T |
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| Q |
120 |
gtgctactccagagatcgcacctgaaaatgtttacatgactgctcaacagatgaataggg---aaaactcaagtttagcttcaaggtttaatataacatg |
216 |
Q |
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| || || ||||||||| || || | |||||| ||||||||||| |||||||||||| | || || | |||||||||| || || |||||||| |
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| T |
17348798 |
gcgcggctagagagatcgcgccggatagtgtttatatgactgctcaggagatgaatagggatcataattccattttagcttcacaattcaacataacatg |
17348897 |
T |
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| Q |
217 |
gaattttcctgtggctcgtgatggcgtttcacatttgattcggttgcatttttgtgatattgttagtacttcgctcaacttgctttactttgatgt |
312 |
Q |
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||||||| | |||| | | ||| ||| |||| | ||||||||||||| || |||||||||||| |||| || || ||| | ||||||||||| |
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| T |
17348898 |
gaatttttcagtggattctattggtgttcgacatcttgttcggttgcatttctgcgatattgttagtccttctcttaatttgttatactttgatgt |
17348993 |
T |
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