View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8701_high_17 (Length: 250)
Name: NF8701_high_17
Description: NF8701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8701_high_17 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 14 - 250
Target Start/End: Complemental strand, 45969697 - 45969460
Alignment:
| Q |
14 |
agacggaaacatatcaaatccatctgataaacataggttaaggatcattcgtaagcctgtttgcacttccaacttttcttgcaagctgtagtcaccagtg |
113 |
Q |
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| T |
45969697 |
agacggaaacatatcaaatccatctgataaacataggttaaggatcattcgtaagcctgtttgcacttccaacttttcttgcaagctgtagtcaccagtg |
45969598 |
T |
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| Q |
114 |
agtttcccataagctctaagcagaatgatccaccacaatcctatcaaggaaccaaccatag-nnnnnnnntcatcttatgaagtcaatgatcaacataga |
212 |
Q |
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| T |
45969597 |
agtttcccataagctctaagcagaatgatccaccacaatcctatcaaggaaccaaccatagaaaaaaaaatcatcttatgaagtcaatgatcaacataga |
45969498 |
T |
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| Q |
213 |
ttatggaaatgacttctctgttacataattattactcc |
250 |
Q |
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| T |
45969497 |
ttatggaaatgacttctctgttacataattattactcc |
45969460 |
T |
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Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 160
Target Start/End: Original strand, 37653806 - 37653958
Alignment:
| Q |
8 |
tagcagagacggaaacatatcaaatccatctgataaacataggttaaggatcattcgtaagcctgtttgcacttccaacttttcttgcaagctgtagtca |
107 |
Q |
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||||||||| |||||||||||||| ||||||| || ||| | ||||| |||||| ||||||||||| || || | | |||||||||| ||||||||| |
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| T |
37653806 |
tagcagagatggaaacatatcaaaaccatctgttagacacaatttaagaatcattttcaagcctgtttgaacatcaaccctttcttgcaaactgtagtca |
37653905 |
T |
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| Q |
108 |
ccagtgagtttcccataagctctaagcagaatgatccaccacaatcctatcaa |
160 |
Q |
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| T |
37653906 |
ccggtgatcttcccataagcccgtaataggatgatccaccacaatcctatcaa |
37653958 |
T |
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