View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8701_high_19 (Length: 240)
Name: NF8701_high_19
Description: NF8701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8701_high_19 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 9008861 - 9008631
Alignment:
| Q |
18 |
aaagcataacttctttgctacacaaaattctaccaacagcatgttcacagagagtgtgaccatcatgaggaaaaacatagagaagacaaaaacatccctg |
117 |
Q |
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| T |
9008861 |
aaagcataacttctttgttacacaaaattctaccaacagcatgttcacagagagtgtgaccatcatgaggaaaaacatagagaagacaaaaacatccctg |
9008762 |
T |
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| Q |
118 |
tgaaactaaacttaaaaccttaaatgtc--------ttcatcatcttaagaacttcttcctggaatctcttataaattggtatcattatctggtttcgat |
209 |
Q |
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| T |
9008761 |
cgaaactaaactcaaaaccttaaatgtctctcaaagttcatcatcttaagaacttcttcctggattctcttataaattggtatcattatctggtttcgat |
9008662 |
T |
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| Q |
210 |
gcatcttcttcgttaagtatcttcccatctc |
240 |
Q |
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| T |
9008661 |
gcatcttcttcgttaagtatcttcccatctc |
9008631 |
T |
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