View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8701_high_9 (Length: 351)
Name: NF8701_high_9
Description: NF8701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8701_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-137; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 5190671 - 5190339
Alignment:
| Q |
1 |
agtacaatgtttcaataatttagcttttatgcaaaattgaaaagctttttattttgcnnnnnnntatttttatgtctctaaattctaattttattgtgac |
100 |
Q |
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| T |
5190671 |
agtacaatgtttcaataatttagcttttatgcaaaattgaaaagcttttaattttgcaaaaaattatttttatgtctctaaattctaattttattgtgac |
5190572 |
T |
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| Q |
101 |
atgaatgaatgtaagggg-------------atgagaattaatataccttggataaggggaacctttgatgggtttctgaccatactttctccaagccca |
187 |
Q |
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| T |
5190571 |
atgaatgaatgtaaaggggatgagattgagaatgagaaataatataccttggataaggggaacctttgatgggtttctgaccatactttctccaagccca |
5190472 |
T |
|
| Q |
188 |
tgaatcagacggtggagtattagtcccttcaacattcttcattggaatctctactacccttttctttatacctcgcctattatacattaattaacatgca |
287 |
Q |
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| T |
5190471 |
tgaatcagacggtggagtattagtcccttcaacattcttcattggaatctctactactcttttctttatacctcgcctattatacattaattaacatgga |
5190372 |
T |
|
| Q |
288 |
aaattattttctacagatcaatagttgagatgt |
320 |
Q |
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| T |
5190371 |
aaattattttctacagatcaatagttgagatgt |
5190339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 132 - 203
Target Start/End: Original strand, 35205472 - 35205543
Alignment:
| Q |
132 |
taccttggataaggggaacctttgatgggtttctgaccatactttctccaagcccatgaatcagacggtgga |
203 |
Q |
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| T |
35205472 |
taccttggataaggggagcctttgatgggcttttgaccgtactttctccaagcccatgaatccgacggtgga |
35205543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 132 - 187
Target Start/End: Original strand, 12166315 - 12166370
Alignment:
| Q |
132 |
taccttggataaggggaacctttgatgggtttctgaccatactttctccaagccca |
187 |
Q |
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| T |
12166315 |
taccttggataaggtgaacctttaataggcttctgaccatattttctccaagccca |
12166370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 131 - 209
Target Start/End: Complemental strand, 36065056 - 36064978
Alignment:
| Q |
131 |
ataccttggataaggggaacctttgatgggtttctgaccatactttctccaagcccatgaatcagacggtggagtatta |
209 |
Q |
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| T |
36065056 |
atacctgggataaggcgaacctttgatgggtttctggccatattttctccatgcccatgaatctgaaggtggtgtatta |
36064978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 132 - 183
Target Start/End: Original strand, 39255755 - 39255806
Alignment:
| Q |
132 |
taccttggataaggggaacctttgatgggtttctgaccatactttctccaag |
183 |
Q |
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|||||||||| ||| |||||||| || |||||||||||||| |||||||||| |
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| T |
39255755 |
taccttggatgaggtgaacctttaataggtttctgaccatattttctccaag |
39255806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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